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@245
|
[245]
|
08/24/09 17:03:49 |
cholt |
fgenesh fix |
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@244
|
[244]
|
08/21/09 16:52:11 |
cholt |
bug in repeat mask cause by prok upgrade |
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@243
|
[243]
|
08/21/09 10:05:33 |
cholt |
prokaryote maker updae |
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@242
|
[242]
|
08/18/09 14:25:27 |
cholt |
prokaryote maker |
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@240
|
[240]
|
08/03/09 13:05:45 |
cholt |
fix nfs lock |
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|
@239
|
[239]
|
07/27/09 16:04:03 |
cholt |
GI updated |
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@237
|
[237]
|
07/27/09 16:01:57 |
cholt |
GI updated |
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@235
|
[235]
|
07/14/09 23:23:44 |
cholt |
fixed for abinit to pred_gff |
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@232
|
[232]
|
07/14/09 11:37:18 |
cholt |
quick repeatmask |
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@231
|
[231]
|
07/14/09 11:36:10 |
cholt |
fix formatdb |
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|
@229
|
[229]
|
07/12/09 20:49:05 |
cholt |
gmod build |
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@228
|
[228]
|
07/07/09 15:20:38 |
cholt |
update mpi_iprscan |
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|
@225
|
[225]
|
06/22/09 16:20:18 |
cholt |
fix more mpi_iprscan |
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|
|
@222
|
[222]
|
06/22/09 12:34:39 |
cholt |
update maker |
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|
@221
|
[221]
|
06/22/09 12:33:44 |
cholt |
mpi_iprscan added |
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|
@220
|
[220]
|
06/12/09 16:57:31 |
hao |
AED is corrected in evaluator and no more nearly infinite loop~ |
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|
|
@219
|
[219]
|
06/12/09 15:55:52 |
hao |
greatly changed evaluator AED calculated algorithm to make it fasta, but … |
|
|
|
@218
|
[218]
|
06/03/09 11:46:38 |
hao |
fixed an evaluator bug |
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|
|
@216
|
[216]
|
05/13/09 09:32:23 |
cholt |
augustus update |
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@215
|
[215]
|
05/13/09 09:17:32 |
cholt |
augustus fix |
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|
|
@214
|
[214]
|
05/12/09 17:00:43 |
cholt |
fix for new augustus output |
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|
@211
|
[211]
|
04/30/09 14:02:43 |
cholt |
added better genemark support |
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|
@209
|
[209]
|
04/28/09 15:01:45 |
cholt |
lock file update |
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|
|
@207
|
[207]
|
04/28/09 14:58:46 |
cholt |
fix error checking in widgets |
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|
|
@203
|
[203]
|
04/14/09 14:54:26 |
hao |
fixed a evaluator bug in pseudo_hit.pm |
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|
|
@202
|
[202]
|
04/14/09 12:53:07 |
cholt |
fixed some gff3 issues |
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|
|
@200
|
[200]
|
04/13/09 16:52:41 |
hao |
fixed a bug in evaluator |
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|
|
@198
|
[198]
|
04/08/09 14:42:34 |
cholt |
Changed back to three control files, and added mpi_evaluator |
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|
|
@197
|
[197]
|
04/08/09 13:54:07 |
cholt |
mapping formard now works |
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|
|
@195
|
[195]
|
04/07/09 16:36:40 |
cholt |
fix dumper GFFDB, and added again option to maker |
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|
|
@194
|
[194]
|
04/07/09 15:36:10 |
cholt |
fix GFF dumper error, fix bad CDS error, fix change gffdb error, fix uniw … |
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|
|
@193
|
[193]
|
04/04/09 12:43:21 |
cholt |
fix UTR join |
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|
|
@191
|
[191]
|
04/02/09 00:18:17 |
cholt |
fix run_log |
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|
|
@190
|
[190]
|
04/01/09 23:40:44 |
cholt |
improve runlog to always remove temp_dirs |
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|
|
@189
|
[189]
|
04/01/09 23:32:59 |
cholt |
fix run_log not deleting error |
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|
|
@188
|
[188]
|
04/01/09 15:42:04 |
cholt |
fix auto_annotator predictions not moving forward bug |
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|
|
@187
|
[187]
|
04/01/09 14:59:13 |
cholt |
fix auto_annotator bug |
|
|
|
@186
|
[186]
|
04/01/09 14:31:37 |
cholt |
fix all_preds in evidence and changed how clusters are made for … |
|
|
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@185
|
[185]
|
03/31/09 16:14:50 |
cholt |
fix auto_annotator error and control files error and updarte gff3.tiers |
|
|
|
@184
|
[184]
|
03/31/09 15:38:02 |
cholt |
fix bug in control file proccessing |
|
|
|
@183
|
[183]
|
03/31/09 15:17:40 |
cholt |
map names forward, CDS competition on opposite strands accounted for |
|
|
|
@182
|
[182]
|
03/26/09 22:50:47 |
cholt |
augustus bug fix and gff3.tiers edit |
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|
|
@181
|
[181]
|
03/26/09 16:44:29 |
cholt |
update maker to accept min protein lengths |
|
|
|
@179
|
[179]
|
03/25/09 11:14:17 |
cholt |
temporary fix to GFFDB.pm names |
|
|
|
@173
|
[173]
|
03/24/09 15:08:16 |
cholt |
update README |
|
|
|
@172
|
[172]
|
03/23/09 23:09:11 |
cholt |
added genemark |
|
|
|
@171
|
[171]
|
03/20/09 15:49:38 |
cholt |
added genemark |
|
|
|
@170
|
[170]
|
03/20/09 10:37:57 |
hao |
fixed another bug in evaluator in passing parameters |
|
|
|
@169
|
[169]
|
03/19/09 17:09:08 |
cholt |
fix evidence merge bug |
|
|
|
@168
|
[168]
|
03/19/09 16:55:49 |
cholt |
added check pn abinit overhang |
|
|
|
@167
|
[167]
|
03/19/09 15:38:00 |
hao |
Fix a minor bug in evaluate.pm |
|
|
|
@166
|
[166]
|
03/18/09 14:45:05 |
cholt |
fix B < E error and many more |
|
|
|
@165
|
[165]
|
03/18/09 14:09:53 |
cholt |
fix evidence merge error |
|
|
|
@164
|
[164]
|
03/17/09 17:15:26 |
cholt |
fix gff3 passthrough error |
|
|
|
@163
|
[163]
|
03/17/09 16:33:56 |
cholt |
fix hsp duplication error |
|
|
|
@162
|
[162]
|
03/17/09 13:31:36 |
cholt |
evaluator ok to run in new maker |
|
|
|
@161
|
[161]
|
03/17/09 11:17:17 |
cholt |
xAED implemented |
|
|
|
@160
|
[160]
|
03/16/09 14:18:16 |
cholt |
Maker Updates for OOmycete genome, clone hsps, hits in join.pm |
|
|
|
@159
|
[159]
|
03/09/09 00:50:16 |
cholt |
maker update for all oomycete |
|
|
|
@158
|
[158]
|
03/09/09 00:49:43 |
cholt |
maker update with oomycete genome |
|
|
|
@157
|
[157]
|
02/25/09 15:03:14 |
hao |
-- |
|
|
|
@156
|
[156]
|
02/20/09 17:43:22 |
hao |
Fix no evaluator output bug |
|
|
|
@155
|
[155]
|
02/20/09 13:55:44 |
cholt |
fix fail on fathom disabled |
|
|
|
@153
|
[153]
|
02/20/09 13:40:05 |
cholt |
fathom enabled |
|
|
|
@152
|
[152]
|
02/20/09 12:42:04 |
cholt |
evaluator active |
|
|
|
@151
|
[151]
|
02/20/09 12:38:14 |
cholt |
maker update CDS has stop codon and other opts |
|
|
|
@150
|
[150]
|
02/10/09 13:58:36 |
hao |
-- |
|
|
|
@147
|
[147]
|
02/10/09 12:02:11 |
hao |
-- |
|
|
|
@146
|
[146]
|
02/09/09 16:49:11 |
cholt |
temporarily disabled evaluator AED |
|
|
|
@145
|
[145]
|
02/07/09 00:29:07 |
cholt |
fix single exon est2genome error |
|
|
|
@144
|
[144]
|
02/06/09 23:23:19 |
cholt |
mpi maker updated |
|
|
|
@143
|
[143]
|
02/06/09 17:02:43 |
cholt |
fix weird fasta errors |
|
|
|
@142
|
[142]
|
02/02/09 17:48:46 |
hao |
removed UTR before generating snap-backwards |
|
|
|
@141
|
[141]
|
02/02/09 16:23:00 |
hao |
added snap-backwards score |
|
|
|
@140
|
[140]
|
01/30/09 14:40:35 |
hao |
-- |
|
|
|
@139
|
[139]
|
01/28/09 12:54:41 |
cholt |
fix gff3 parsing error and blast empty error |
|
|
|
@138
|
[138]
|
01/28/09 10:43:01 |
hao |
-- |
|
|
|
@137
|
[137]
|
01/27/09 16:59:05 |
cholt |
no valid contexrts error fix |
|
|
|
@136
|
[136]
|
01/27/09 15:52:17 |
hao |
added pseudo hit feature |
|
|
|
@135
|
[135]
|
01/26/09 19:19:30 |
hao |
-- |
|
|
|
@134
|
[134]
|
01/25/09 11:32:42 |
hao |
Added new AED feature |
|
|
|
@133
|
[133]
|
01/23/09 17:02:42 |
cholt |
ignore contig line in all gff3 |
|
|
|
@132
|
[132]
|
01/23/09 16:58:10 |
cholt |
fix annotation passthrough |
|
|
|
@131
|
[131]
|
01/23/09 16:22:26 |
cholt |
fix fasta index error |
|
|
|
@130
|
[130]
|
01/23/09 14:19:44 |
cholt |
fix get_selected_type function errors |
|
|
|
@129
|
[129]
|
01/23/09 13:00:25 |
cholt |
remove redundant files |
|
|
|
@128
|
[128]
|
01/23/09 12:59:29 |
cholt |
missing MakerChunk? |
|
|
|
@127
|
[127]
|
01/23/09 12:58:16 |
cholt |
major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
|
|
|
@126
|
[126]
|
01/23/09 10:43:34 |
hao |
with AED added to Evaluator |
|
|
|
@125
|
[125]
|
01/23/09 10:43:13 |
hao |
with AED added to Evaluator |
|
|
|
@124
|
[124]
|
01/12/09 11:57:19 |
myandell |
added qrna widget, hsp and hit classes |
|
|
|
@122
|
[122]
|
11/21/08 14:57:37 |
hao |
-- |
|
|
|
@121
|
[121]
|
11/14/08 12:34:36 |
hao |
-- |
|
|
|
@120
|
[120]
|
11/13/08 16:04:02 |
hao |
Integrated evaluator into Maker |
|
|
|
@119
|
[119]
|
11/13/08 16:01:42 |
hao |
Integrated evaluator into Maker |
|
|
|
@118
|
[118]
|
10/21/08 16:33:29 |
cholt |
changes to fgenesh modules |
|
|
|
@117
|
[117]
|
10/21/08 15:41:33 |
cholt |
add fgenesh modules |
|
|
|
@114
|
[114]
|
10/03/08 14:28:35 |
cholt |
MPI install fixes |
|
|
|
@113
|
[113]
|
10/03/08 12:45:43 |
cholt |
tblastx fix |
|
|
|
@112
|
[112]
|
10/03/08 12:44:11 |
cholt |
tblastx fix |
