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@281
|
[281]
|
11/12/09 16:09:36 |
cholt |
no longer thread dependant, fixed overhang bug, and evidence clustering … |
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@279
|
[279]
|
11/10/09 12:26:01 |
bmoore |
Carsons lib/maker/auto_annotator.pm update |
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@271
|
[271]
|
09/30/09 14:05:39 |
cholt |
make runlog softmask instensitive for old data. Fix fgenesh xdef errors |
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@268
|
[268]
|
09/23/09 11:23:55 |
cholt |
added AED_threshold to MAKER |
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@243
|
[243]
|
08/21/09 10:05:33 |
cholt |
prokaryote maker updae |
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@242
|
[242]
|
08/18/09 14:25:27 |
cholt |
prokaryote maker |
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@235
|
[235]
|
07/14/09 23:23:44 |
cholt |
fixed for abinit to pred_gff |
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@202
|
[202]
|
04/14/09 12:53:07 |
cholt |
fixed some gff3 issues |
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@197
|
[197]
|
04/08/09 13:54:07 |
cholt |
mapping formard now works |
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@194
|
[194]
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04/07/09 15:36:10 |
cholt |
fix GFF dumper error, fix bad CDS error, fix change gffdb error, fix uniw … |
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@193
|
[193]
|
04/04/09 12:43:21 |
cholt |
fix UTR join |
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@188
|
[188]
|
04/01/09 15:42:04 |
cholt |
fix auto_annotator predictions not moving forward bug |
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@187
|
[187]
|
04/01/09 14:59:13 |
cholt |
fix auto_annotator bug |
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@186
|
[186]
|
04/01/09 14:31:37 |
cholt |
fix all_preds in evidence and changed how clusters are made for … |
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@185
|
[185]
|
03/31/09 16:14:50 |
cholt |
fix auto_annotator error and control files error and updarte gff3.tiers |
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@183
|
[183]
|
03/31/09 15:17:40 |
cholt |
map names forward, CDS competition on opposite strands accounted for |
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@181
|
[181]
|
03/26/09 16:44:29 |
cholt |
update maker to accept min protein lengths |
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@172
|
[172]
|
03/23/09 23:09:11 |
cholt |
added genemark |
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@169
|
[169]
|
03/19/09 17:09:08 |
cholt |
fix evidence merge bug |
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|
|
@168
|
[168]
|
03/19/09 16:55:49 |
cholt |
added check pn abinit overhang |
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@166
|
[166]
|
03/18/09 14:45:05 |
cholt |
fix B < E error and many more |
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@165
|
[165]
|
03/18/09 14:09:53 |
cholt |
fix evidence merge error |
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|
@164
|
[164]
|
03/17/09 17:15:26 |
cholt |
fix gff3 passthrough error |
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|
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@163
|
[163]
|
03/17/09 16:33:56 |
cholt |
fix hsp duplication error |
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@162
|
[162]
|
03/17/09 13:31:36 |
cholt |
evaluator ok to run in new maker |
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|
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@161
|
[161]
|
03/17/09 11:17:17 |
cholt |
xAED implemented |
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|
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@160
|
[160]
|
03/16/09 14:18:16 |
cholt |
Maker Updates for OOmycete genome, clone hsps, hits in join.pm |
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|
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@158
|
[158]
|
03/09/09 00:49:43 |
cholt |
maker update with oomycete genome |
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|
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@156
|
[156]
|
02/20/09 17:43:22 |
hao |
Fix no evaluator output bug |
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|
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@155
|
[155]
|
02/20/09 13:55:44 |
cholt |
fix fail on fathom disabled |
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|
|
@152
|
[152]
|
02/20/09 12:42:04 |
cholt |
evaluator active |
|
|
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@151
|
[151]
|
02/20/09 12:38:14 |
cholt |
maker update CDS has stop codon and other opts |
|
|
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@147
|
[147]
|
02/10/09 12:02:11 |
hao |
-- |
|
|
|
@146
|
[146]
|
02/09/09 16:49:11 |
cholt |
temporarily disabled evaluator AED |
|
|
|
@145
|
[145]
|
02/07/09 00:29:07 |
cholt |
fix single exon est2genome error |
|
|
|
@141
|
[141]
|
02/02/09 16:23:00 |
hao |
added snap-backwards score |
|
|
|
@138
|
[138]
|
01/28/09 10:43:01 |
hao |
-- |
|
|
|
@132
|
[132]
|
01/23/09 16:58:10 |
cholt |
fix annotation passthrough |
|
|
|
@131
|
[131]
|
01/23/09 16:22:26 |
cholt |
fix fasta index error |
|
|
|
@130
|
[130]
|
01/23/09 14:19:44 |
cholt |
fix get_selected_type function errors |
|
|
|
@127
|
[127]
|
01/23/09 12:58:16 |
cholt |
major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
|
|
|
@125
|
[125]
|
01/23/09 10:43:13 |
hao |
with AED added to Evaluator |
|
|
|
@122
|
[122]
|
11/21/08 14:57:37 |
hao |
-- |
|
|
|
@121
|
[121]
|
11/14/08 12:34:36 |
hao |
-- |
|
|
|
@119
|
[119]
|
11/13/08 16:01:42 |
hao |
Integrated evaluator into Maker |
|
|
|
@107
|
[107]
|
09/23/08 16:49:57 |
cholt |
fix gene name error across contigs error |
|
|
|
@89
|
[89]
|
08/26/08 17:15:30 |
cholt |
error |
