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@281
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[281]
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11/12/09 16:09:36 |
cholt |
no longer thread dependant, fixed overhang bug, and evidence clustering … |
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@277
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[277]
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11/04/09 09:39:38 |
cholt |
attempt to fix exonerate holdover errors |
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@275
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[275]
|
10/12/09 14:06:24 |
cholt |
added some changes to how tmp is used and fixed blastrm params |
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@274
|
[274]
|
10/11/09 00:43:34 |
cholt |
rm blastx but in parameters being passed |
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@271
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[271]
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09/30/09 14:05:39 |
cholt |
make runlog softmask instensitive for old data. Fix fgenesh xdef errors |
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@269
|
[269]
|
09/24/09 11:42:35 |
cholt |
try to fix weird randon cwd regular expression related error |
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@268
|
[268]
|
09/23/09 11:23:55 |
cholt |
added AED_threshold to MAKER |
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@266
|
[266]
|
09/17/09 22:33:00 |
cholt |
undit filter=seg, unexpected problems |
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@265
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[265]
|
09/17/09 14:28:34 |
cholt |
set filter=seg for blastx instead of wordmask=seg, gives better … |
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@260
|
[260]
|
09/09/09 13:38:19 |
cholt |
made indexing search less IO intensive |
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@249
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[249]
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08/31/09 17:07:51 |
cholt |
index error fixes |
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@248
|
[248]
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08/31/09 08:34:40 |
cholt |
weird index error and blast merge error |
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@247
|
[247]
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08/27/09 12:41:35 |
cholt |
fix weird merging error |
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@244
|
[244]
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08/21/09 16:52:11 |
cholt |
bug in repeat mask cause by prok upgrade |
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@242
|
[242]
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08/18/09 14:25:27 |
cholt |
prokaryote maker |
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@239
|
[239]
|
07/27/09 16:04:03 |
cholt |
GI updated |
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@237
|
[237]
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07/27/09 16:01:57 |
cholt |
GI updated |
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@235
|
[235]
|
07/14/09 23:23:44 |
cholt |
fixed for abinit to pred_gff |
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@232
|
[232]
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07/14/09 11:37:18 |
cholt |
quick repeatmask |
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@229
|
[229]
|
07/12/09 20:49:05 |
cholt |
gmod build |
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@222
|
[222]
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06/22/09 12:34:39 |
cholt |
update maker |
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@209
|
[209]
|
04/28/09 15:01:45 |
cholt |
lock file update |
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@198
|
[198]
|
04/08/09 14:42:34 |
cholt |
Changed back to three control files, and added mpi_evaluator |
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@197
|
[197]
|
04/08/09 13:54:07 |
cholt |
mapping formard now works |
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@195
|
[195]
|
04/07/09 16:36:40 |
cholt |
fix dumper GFFDB, and added again option to maker |
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@184
|
[184]
|
03/31/09 15:38:02 |
cholt |
fix bug in control file proccessing |
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@183
|
[183]
|
03/31/09 15:17:40 |
cholt |
map names forward, CDS competition on opposite strands accounted for |
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@181
|
[181]
|
03/26/09 16:44:29 |
cholt |
update maker to accept min protein lengths |
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|
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@173
|
[173]
|
03/24/09 15:08:16 |
cholt |
update README |
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@172
|
[172]
|
03/23/09 23:09:11 |
cholt |
added genemark |
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@171
|
[171]
|
03/20/09 15:49:38 |
cholt |
added genemark |
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|
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@168
|
[168]
|
03/19/09 16:55:49 |
cholt |
added check pn abinit overhang |
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|
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@163
|
[163]
|
03/17/09 16:33:56 |
cholt |
fix hsp duplication error |
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|
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@162
|
[162]
|
03/17/09 13:31:36 |
cholt |
evaluator ok to run in new maker |
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|
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@161
|
[161]
|
03/17/09 11:17:17 |
cholt |
xAED implemented |
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|
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@160
|
[160]
|
03/16/09 14:18:16 |
cholt |
Maker Updates for OOmycete genome, clone hsps, hits in join.pm |
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|
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@159
|
[159]
|
03/09/09 00:50:16 |
cholt |
maker update for all oomycete |
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|
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@153
|
[153]
|
02/20/09 13:40:05 |
cholt |
fathom enabled |
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|
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@151
|
[151]
|
02/20/09 12:38:14 |
cholt |
maker update CDS has stop codon and other opts |
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|
|
@146
|
[146]
|
02/09/09 16:49:11 |
cholt |
temporarily disabled evaluator AED |
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|
|
@145
|
[145]
|
02/07/09 00:29:07 |
cholt |
fix single exon est2genome error |
|
|
|
@144
|
[144]
|
02/06/09 23:23:19 |
cholt |
mpi maker updated |
|
|
|
@143
|
[143]
|
02/06/09 17:02:43 |
cholt |
fix weird fasta errors |
|
|
|
@141
|
[141]
|
02/02/09 16:23:00 |
hao |
added snap-backwards score |
|
|
|
@131
|
[131]
|
01/23/09 16:22:26 |
cholt |
fix fasta index error |
|
|
|
@127
|
[127]
|
01/23/09 12:58:16 |
cholt |
major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
