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Rev Chgset Date Author Log Message
(edit) @277 [277] 11/04/2009 09:39:38 AM cholt attempt to fix exonerate holdover errors
(edit) @270 [270] 09/24/2009 09:45:45 PM bmoore Modifications to some scripts by Barry
(edit) @267 [267] 09/22/2009 02:31:50 PM cholt small changes to make maker2chado fail when no chado
(edit) @263 [263] 09/15/2009 04:29:51 PM cholt include JBrowse configuration files
(edit) @262 [262] 09/15/2009 01:26:04 PM cholt fix maker2jbrowse
(edit) @261 [261] 09/14/2009 01:13:04 PM cholt added maker2jbrowse
(edit) @257 [257] 09/04/2009 12:58:37 PM cholt fix gff3_merge
(edit) @256 [256] 09/04/2009 10:45:29 AM cholt Update tiers
(edit) @254 [254] 09/04/2009 09:46:41 AM cholt iprscan and gff3_merge and fastamerge update
(edit) @253 [253] 09/02/2009 01:47:56 PM cholt maker2chado use local libs
(edit) @251 [251] 09/01/2009 11:29:27 AM cholt added genemark gtf converter
(edit) @249 [249] 08/31/2009 05:07:51 PM cholt index error fixes
(edit) @244 [244] 08/21/2009 04:52:11 PM cholt bug in repeat mask cause by prok upgrade
(edit) @242 [242] 08/18/2009 02:25:27 PM cholt prokaryote maker
(edit) @241 [241] 08/13/2009 02:34:20 PM cholt maker2chado
(edit) @236 [236] 07/14/2009 11:35:46 PM cholt fix usage
(edit) @235 [235] 07/14/2009 11:23:44 PM cholt fixed for abinit to pred_gff
(edit) @234 [234] 07/14/2009 12:05:38 PM cholt fix zff converter
(edit) @233 [233] 07/14/2009 12:01:22 PM cholt fix zff converter
(edit) @224 [224] 06/22/2009 12:44:51 PM cholt update mpi_iprscan
(edit) @223 [223] 06/22/2009 12:36:39 PM cholt remove genbank converter
(edit) @222 [222] 06/22/2009 12:34:39 PM cholt update maker
(edit) @221 [221] 06/22/2009 12:33:44 PM cholt mpi_iprscan added
(edit) @217 [217] 05/14/2009 03:00:41 AM cholt added genbank converter
(edit) @213 [213] 05/06/2009 01:03:22 PM bmoore minor changes to iprscan_batch and fasta_merge
(edit) @208 [208] 04/28/2009 02:59:45 PM cholt added usage to iprscan_batch
(edit) @206 [206] 04/24/2009 05:41:35 PM cholt fix add_utr_gff
(edit) @205 [205] 04/24/2009 04:56:11 PM cholt added lock control and other bug fixes
(edit) @204 [204] 04/21/2009 05:55:00 PM bmoore added maker_functional_fasta maker_functional_gff ipr_update_gff
(edit) @202 [202] 04/14/2009 12:53:07 PM cholt fixed some gff3 issues
(edit) @201 [201] 04/14/2009 12:52:05 PM cholt added split_fasta
(edit) @199 [199] 04/10/2009 12:00:34 PM bmoore updates to ID mapping scripts and reformatted README for printer and …
(edit) @198 [198] 04/08/2009 02:42:34 PM cholt Changed back to three control files, and added mpi_evaluator
(edit) @196 [196] 04/07/2009 04:40:10 PM cholt commiting iprscan tools and gtf tools
(edit) @195 [195] 04/07/2009 04:36:40 PM cholt fix dumper GFFDB, and added again option to maker
(edit) @194 [194] 04/07/2009 03:36:10 PM cholt fix GFF dumper error, fix bad CDS error, fix change gffdb error, fix uniw …
(edit) @192 [192] 04/04/2009 12:26:02 PM bmoore Adding maker_map_ids, map_fasta_ids & map_gff_ids
(edit) @188 [188] 04/01/2009 03:42:04 PM cholt fix auto_annotator predictions not moving forward bug
(edit) @183 [183] 03/31/2009 03:17:40 PM cholt map names forward, CDS competition on opposite strands accounted for
(edit) @176 [176] 03/25/2009 10:52:13 AM cholt update use lib in maker
(edit) @174 [174] 03/25/2009 10:37:38 AM cholt added DBI and DBD::SQLite
(edit) @162 [162] 03/17/2009 01:31:36 PM cholt evaluator ok to run in new maker
(edit) @159 [159] 03/09/2009 12:50:16 AM cholt maker update for all oomycete
(edit) @154 [154] 02/20/2009 01:42:57 PM cholt fasta_merge added
(edit) @151 [151] 02/20/2009 12:38:14 PM cholt maker update CDS has stop codon and other opts
(edit) @146 [146] 02/09/2009 04:49:11 PM cholt temporarily disabled evaluator AED
(edit) @144 [144] 02/06/2009 11:23:19 PM cholt mpi maker updated
(edit) @143 [143] 02/06/2009 05:02:43 PM cholt fix weird fasta errors
(edit) @134 [134] 01/25/2009 11:32:42 AM hao Added new AED feature
(edit) @131 [131] 01/23/2009 04:22:26 PM cholt fix fasta index error
(edit) @127 [127] 01/23/2009 12:58:16 PM cholt major maker update, gff passthrough, evaluator integration, tblastx, ncbi, …
(edit) @123 [123] 11/26/2008 10:50:21 AM hao --
(edit) @116 [116] 10/21/2008 01:55:49 PM cholt added tools to maker
(edit) @111 [111] 10/03/2008 12:04:06 PM cholt tblastx mpi_maker
(edit) @109 [109] 10/02/2008 03:00:55 PM cholt tblastx added to maker
(edit) @108 [108] 09/26/2008 11:26:00 AM cholt tblastx added
(edit) @103 [103] 09/16/2008 03:52:07 PM cholt count fix
(edit) @101 [101] 09/15/2008 01:35:22 PM cholt clean up temp automatically
(edit) @99 [99] 09/09/2008 04:23:20 PM cholt snap is now optional
(edit) @93 [93] 08/28/2008 12:31:28 PM cholt snap not always called now
(add) @89 [89] 08/26/2008 05:15:30 PM cholt error
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