root


Mode:

Legend:

Added
Modified
Copied or renamed
Rev Chgset Date Author Log Message
(edit) @176 [176] 03/25/09 10:52:13 cholt update use lib in maker
(edit) @175 [175] 03/25/09 10:51:04 cholt update MakeFile?.PL dor DBI
(edit) @174 [174] 03/25/09 10:37:38 cholt added DBI and DBD::SQLite
(edit) @173 [173] 03/24/09 15:08:16 cholt update README
(edit) @172 [172] 03/23/09 23:09:11 cholt added genemark
(edit) @171 [171] 03/20/09 15:49:38 cholt added genemark
(edit) @170 [170] 03/20/09 10:37:57 hao fixed another bug in evaluator in passing parameters
(edit) @169 [169] 03/19/09 17:09:08 cholt fix evidence merge bug
(edit) @168 [168] 03/19/09 16:55:49 cholt added check pn abinit overhang
(edit) @167 [167] 03/19/09 15:38:00 hao Fix a minor bug in evaluate.pm
(edit) @166 [166] 03/18/09 14:45:05 cholt fix B < E error and many more
(edit) @165 [165] 03/18/09 14:09:53 cholt fix evidence merge error
(edit) @164 [164] 03/17/09 17:15:26 cholt fix gff3 passthrough error
(edit) @163 [163] 03/17/09 16:33:56 cholt fix hsp duplication error
(edit) @162 [162] 03/17/09 13:31:36 cholt evaluator ok to run in new maker
(edit) @161 [161] 03/17/09 11:17:17 cholt xAED implemented
(edit) @160 [160] 03/16/09 14:18:16 cholt Maker Updates for OOmycete genome, clone hsps, hits in join.pm
(edit) @159 [159] 03/09/09 00:50:16 cholt maker update for all oomycete
(edit) @158 [158] 03/09/09 00:49:43 cholt maker update with oomycete genome
(edit) @157 [157] 02/25/09 15:03:14 hao --
(edit) @156 [156] 02/20/09 17:43:22 hao Fix no evaluator output bug
(edit) @155 [155] 02/20/09 13:55:44 cholt fix fail on fathom disabled
(edit) @154 [154] 02/20/09 13:42:57 cholt fasta_merge added
(edit) @153 [153] 02/20/09 13:40:05 cholt fathom enabled
(edit) @152 [152] 02/20/09 12:42:04 cholt evaluator active
(edit) @151 [151] 02/20/09 12:38:14 cholt maker update CDS has stop codon and other opts
(edit) @150 [150] 02/10/09 13:58:36 hao --
(edit) @149 [149] 02/10/09 12:07:42 cholt remove extra thinks in makefiles
(edit) @148 [148] 02/10/09 12:03:54 cholt update of maker
(edit) @147 [147] 02/10/09 12:02:11 hao --
(edit) @146 [146] 02/09/09 16:49:11 cholt temporarily disabled evaluator AED
(edit) @145 [145] 02/07/09 00:29:07 cholt fix single exon est2genome error
(edit) @144 [144] 02/06/09 23:23:19 cholt mpi maker updated
(edit) @143 [143] 02/06/09 17:02:43 cholt fix weird fasta errors
(edit) @142 [142] 02/02/09 17:48:46 hao removed UTR before generating snap-backwards
(edit) @141 [141] 02/02/09 16:23:00 hao added snap-backwards score
(edit) @140 [140] 01/30/09 14:40:35 hao --
(edit) @139 [139] 01/28/09 12:54:41 cholt fix gff3 parsing error and blast empty error
(edit) @138 [138] 01/28/09 10:43:01 hao --
(edit) @137 [137] 01/27/09 16:59:05 cholt no valid contexrts error fix
(edit) @136 [136] 01/27/09 15:52:17 hao added pseudo hit feature
(edit) @135 [135] 01/26/09 19:19:30 hao --
(edit) @134 [134] 01/25/09 11:32:42 hao Added new AED feature
(edit) @133 [133] 01/23/09 17:02:42 cholt ignore contig line in all gff3
(edit) @132 [132] 01/23/09 16:58:10 cholt fix annotation passthrough
(edit) @131 [131] 01/23/09 16:22:26 cholt fix fasta index error
(edit) @130 [130] 01/23/09 14:19:44 cholt fix get_selected_type function errors
(edit) @129 [129] 01/23/09 13:00:25 cholt remove redundant files
(edit) @128 [128] 01/23/09 12:59:29 cholt missing MakerChunk?
(edit) @127 [127] 01/23/09 12:58:16 cholt major maker update, gff passthrough, evaluator integration, tblastx, ncbi, …
(edit) @126 [126] 01/23/09 10:43:34 hao with AED added to Evaluator
(edit) @125 [125] 01/23/09 10:43:13 hao with AED added to Evaluator
(edit) @124 [124] 01/12/09 11:57:19 myandell added qrna widget, hsp and hit classes
(edit) @123 [123] 11/26/08 10:50:21 hao --
(edit) @122 [122] 11/21/08 14:57:37 hao --
(edit) @121 [121] 11/14/08 12:34:36 hao --
(edit) @120 [120] 11/13/08 16:04:02 hao Integrated evaluator into Maker
(edit) @119 [119] 11/13/08 16:01:42 hao Integrated evaluator into Maker
(edit) @118 [118] 10/21/08 16:33:29 cholt changes to fgenesh modules
(edit) @117 [117] 10/21/08 15:41:33 cholt add fgenesh modules
(edit) @116 [116] 10/21/08 13:55:49 cholt added tools to maker
(edit) @115 [115] 10/03/08 14:38:02 cholt MPI Install fix
(edit) @114 [114] 10/03/08 14:28:35 cholt MPI install fixes
(edit) @113 [113] 10/03/08 12:45:43 cholt tblastx fix
(edit) @112 [112] 10/03/08 12:44:11 cholt tblastx fix
(edit) @111 [111] 10/03/08 12:04:06 cholt tblastx mpi_maker
(edit) @110 [110] 10/02/08 15:38:21 cholt tblastx
(edit) @109 [109] 10/02/08 15:00:55 cholt tblastx added to maker
(edit) @108 [108] 09/26/08 11:26:00 cholt tblastx added
(edit) @107 [107] 09/23/08 16:49:57 cholt fix gene name error across contigs error
(edit) @106 [106] 09/17/08 15:36:35 cholt naming change
(edit) @105 [105] 09/17/08 14:37:58 cholt file naming change
(edit) @104 [104] 09/17/08 11:43:19 cholt index error fix again
(edit) @103 [103] 09/16/08 15:52:07 cholt count fix
(edit) @102 [102] 09/16/08 15:04:30 cholt fix fasta index error
(edit) @101 [101] 09/15/08 13:35:22 cholt clean up temp automatically
(edit) @100 [100] 09/15/08 11:57:35 cholt attempt to fix fasta index error
(edit) @99 [99] 09/09/08 16:23:20 cholt snap is now optional
(edit) @98 [98] 09/09/08 16:11:36 cholt filter changed to wordmask for blast searches
(edit) @97 [97] 09/09/08 13:02:30 cholt fix mpi related issues
(edit) @96 [96] 09/03/08 14:14:48 cholt documentation update
(edit) @95 [95] 09/03/08 14:13:00 cholt update to mpi install
(edit) @94 [94] 09/03/08 14:05:39 cholt threads added to package, changed mpi install
(edit) @93 [93] 08/28/08 12:31:28 cholt snap not always called now
(edit) @92 [92] 08/28/08 11:13:59 cholt fix repeat masker sequence growing issue
(edit) @91 [91] 08/28/08 11:12:09 cholt repeat masker grow error
(edit) @90 [90] 08/28/08 11:04:44 cholt fix repeat masker sequence growing issue
(edit) @89 [89] 08/26/08 17:15:30 cholt error
(edit) @88 [88] 08/26/08 17:13:46 cholt error
(edit) @87 [87] 08/26/08 17:01:19 cholt fix library issue
(edit) @86 [86] 08/26/08 16:42:04 cholt lib missing for some reason
(edit) @85 [85] 08/26/08 16:37:47 cholt added Datastore and Error.pm
(edit) @84 [84] 08/20/08 12:12:58 cholt improve error logging
(edit) @83 [83] 08/19/08 16:55:04 cholt remove File::Find::Rule
(edit) @82 [82] 08/19/08 12:36:08 cholt change cluster size back
(edit) @81 [81] 08/19/08 12:31:21 cholt fix sna0p ZOE issue and contig size issue
(edit) @80 [80] 08/18/08 13:07:10 cholt fix zombies and make clusters big
(edit) @79 [79] 08/15/08 15:19:23 cholt update for use of augustus
(edit) @78 [78] 08/10/08 17:24:58 cholt fix augustus ouput parsing following hint based prediction bug
(edit) @77 [77] 08/05/08 12:46:51 cholt xdformat widget
Note: See TracRevisionLog for help on using the revision log.