Changeset 265

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Timestamp:
09/17/09 14:28:34 (2 months ago)
Author:
cholt
Message:

set filter=seg for blastx instead of wordmask=seg, gives better performance

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  • lib/GI.pm

    r260 r265  
    17651765   if ($command =~ /blastx$/) { 
    17661766      $command .= " $db $q_file B=10000 V=10000 E=$eval_blast"; 
    1767       $command .= ($softmask) ? " wordmask=seg" : " filter=seg"; 
     1767      $command .= " filter=seg"; 
     1768      #$command .= ($softmask) ? " wordmask=seg" : " filter=seg"; 
    17681769      #$command .= " T=20"; 
    17691770      #$command .= " W=5";