root/lib
| Name | Size | Rev | Age | Last Change |
|---|---|---|---|---|
| ../ | ||||
| auto | 89 | 1 year | error | |
| Bio | 172 | 8 months | added genemark | |
| CGL | 151 | 9 months | maker update CDS has stop codon and other opts | |
| Datastore | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … | |
| Dumper | 229 | 4 months | gmod build | |
| Error | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … | |
| evaluator | 281 | 2 weeks | no longer thread dependant, fixed overhang bug, and evidence clustering … | |
| exonerate | 222 | 5 months | update maker | |
| external_gff | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … | |
| File | 281 | 2 weeks | no longer thread dependant, fixed overhang bug, and evidence clustering … | |
| IO | 252 | 3 months | IO prompt | |
| iprscan | 283 | 5 days | mpi_iprscan fixes | |
| Iterator | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … | |
| maker | 281 | 2 weeks | no longer thread dependant, fixed overhang bug, and evidence clustering … | |
| polisher | 172 | 8 months | added genemark | |
| Process | 277 | 3 weeks | attempt to fix exonerate holdover errors | |
| verifier | 89 | 1 year | error | |
| Widget | 282 | 2 weeks | fix gmhmm_wrap failure on overmasking bug | |
| basiclog.pm | 1.4 kB | 259 | 3 months | mpi_iprscan more maker like behavior |
| polisher.pm | 1.6 kB | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
| SpaceBase.pm | 1.6 kB | 89 | 1 year | error |
| shadow_AED.pm | 2.1 kB | 228 | 5 months | update mpi_iprscan |
| FastaChunk.pm | 2.5 kB | 89 | 1 year | error |
| PostData.pm | 2.8 kB | 89 | 1 year | error |
| Iterator.pm | 2.8 kB | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
| ds_utility.pm | 3.8 kB | 271 | 2 months | make runlog softmask instensitive for old data. Fix fgenesh xdef errors |
| Shadower.pm | 4.2 kB | 89 | 1 year | error |
| FastaChunker.pm | 4.2 kB | 144 | 10 months | mpi maker updated |
| FastaFile.pm | 4.6 kB | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
| Widget.pm | 4.8 kB | 89 | 1 year | error |
| repeat_mask_seq.pm | 5.8 kB | 127 | 10 months | major maker update, gff passthrough, evaluator integration, tblastx, ncbi, … |
| SimpleCluster.pm | 5.9 kB | 89 | 1 year | error |
| clean.pm | 6.0 kB | 271 | 2 months | make runlog softmask instensitive for old data. Fix fgenesh xdef errors |
| FastaDB.pm | 6.2 kB | 260 | 3 months | made indexing search less IO intensive |
| compare.pm | 8.9 kB | 281 | 2 weeks | no longer thread dependant, fixed overhang bug, and evidence clustering … |
| Fasta.pm | 9.6 kB | 278 | 3 weeks | fix fasta parsing |
| cluster.pm | 13.3 kB | 281 | 2 weeks | no longer thread dependant, fixed overhang bug, and evidence clustering … |
| runlog.pm | 22.1 kB | 283 | 5 days | mpi_iprscan fixes |
| Error.pm | 23.6 kB | 89 | 1 year | error |
| PhatHit_utils.pm | 27.1 kB | 277 | 3 weeks | attempt to fix exonerate holdover errors |
| GFFDB.pm | 43.2 kB | 214 | 7 months | fix for new augustus output |
| GI.pm | 95.1 kB | 281 | 2 weeks | no longer thread dependant, fixed overhang bug, and evidence clustering … |
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