| 1 |
# This is based on the public fly.tiers file for displaying Drosophila |
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| 2 |
# melanogaster annotations. You might want to modify the tiers file |
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| 3 |
# to display the annotation/results for your specific project. |
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| 4 |
# |
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| 5 |
# This file describes to Apollo how different feature types should be |
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| 6 |
# displayed. |
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| 7 |
# Tiers files have two types of records: tier records and type records. |
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| 8 |
# Tiers are groupings of one or more types to be displayed together. |
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| 9 |
# [Tier] fields and the default values are: |
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| 10 |
# label : false (Group tier label) |
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| 11 |
# visible : true |
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| 12 |
# expanded : false |
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| 13 |
# sorted : false |
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| 14 |
# maxrows : maximum number of rows to show for this tier--default 0 means all |
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| 15 |
# labeled : false |
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| 16 |
# curated : false [Whether to display in blue annotation zone] |
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| 17 |
# warnonedit : false [Can also be used as a Type parameter to tag |
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| 18 |
# individual types] |
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| 19 |
# number_of_levels : 3 [The default is 1, for one-level annotation types; |
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| 20 |
# use 3 for gene-like annotations (gene/transcript/exon)] |
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| 21 |
# |
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| 22 |
# The order in which tiers are listed in this file determines their |
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| 23 |
# vertical display order (the first tier is displayed closest to the |
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| 24 |
# central axis). |
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| 25 |
# |
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| 26 |
# TYPE fields: |
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| 27 |
# tiername : the tier this type appears in |
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| 28 |
# typename : label for this type |
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| 29 |
# resulttype : data type(s) to be included this type |
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| 30 |
# color : can be a standard color name (e.g. red) or an R,G,B triplet (default gray) |
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| 31 |
# utr_color : color used for utr regions. Only works with |
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| 32 |
# DrawableGeneFeatureSet. (default black) |
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| 33 |
# usescore : default true # use score to set the height of this glyph |
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| 34 |
# minscore : 0 # minimum score for scaling height |
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| 35 |
# maxscore : 100 # maximum score for scaling height |
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| 36 |
# glyph : what glyph to use (mandatory). Current choices include |
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| 37 |
# DrawableGeneFeatureSet (exons connected by peaked introns), |
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| 38 |
# DrawableResultFeatureSet (exons connected by straight lines), |
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| 39 |
# DoubleHeadedArrow, Triangle, Zigzag, ThinRectangle (a rectangular outline). |
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| 40 |
# column : names of column(s) in detail table. Choices include |
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| 41 |
# GENOMIC_RANGE, GENOMIC_LENGTH, MATCH_RANGE, MATCH_LENGTH, |
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| 42 |
# SCORE, NAME, READS. You can also specify column names not in all caps |
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| 43 |
# that correspond to properties of the features present in the data (e.g. |
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| 44 |
# query_frame). |
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| 45 |
# sortbycolumn : row order in table determined by this column |
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| 46 |
# reversesort : Sort table rows in reverse order? (default false) |
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| 47 |
# groupby : GENE method to use for grouping features (GENE, SINGLE, HOMOLOGY) |
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| 48 |
# weburl : optional, URL for pulling up web pages about this type of result |
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| 49 |
# freshdate : date after which sequences of this type are considered "new" |
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| 50 |
# (the dates are found in the sequence descriptions) |
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| 51 |
# idformat : format of IDs for this kind of annotation (regexp, e.g. CG\d+) |
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| 52 |
# annot_type : when this result is promoted to an annotation, annot_type says |
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| 53 |
# which type of annotation it should become. |
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| 54 |
# warnonedit : false [Overrides value of warnonedit setting, if any, |
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| 55 |
# for the parent tier] |
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| 56 |
# |
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| 57 |
# The fields for a Type or Tier record can appear in any order, one per |
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| 58 |
# line. Be sure that none of the lines get broken up by inserted newlines. |
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| 59 |
|
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| 60 |
[Tier] |
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| 61 |
tiername : Annotation |
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| 62 |
expanded : true |
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| 63 |
labeled : true |
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| 64 |
curated : true |
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| 65 |
warnonedit : false |
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| 66 |
|
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| 67 |
# Default utr_color is "transparent" (same as AnnotationBackgroundColor defined in game.style) |
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| 68 |
# (So if you change AnnotationBackgroundColor, be sure to change utr_color to match!) |
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| 69 |
[Type] |
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| 70 |
label : gene |
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| 71 |
tiername : Annotation |
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| 72 |
datatype : gene |
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| 73 |
datatype : transcript |
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| 74 |
datatype : exon |
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| 75 |
glyph : DrawableGeneFeatureSet |
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| 76 |
color : 51,102,255 |
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| 77 |
utr_color : 176,224,230 |
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| 78 |
name_method : FlyNameAdapter |
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| 79 |
overlap_method : ORF_Overlap |
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| 80 |
column : GENOMIC_RANGE |
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| 81 |
column : GENOMIC_LENGTH |
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| 82 |
sortbycolumn : GENOMIC_RANGE |
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| 83 |
number_of_levels : 3 |
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| 84 |
|
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| 85 |
[Type] |
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| 86 |
label : tRNA |
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| 87 |
tiername : Annotation |
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| 88 |
datatype : tRNA |
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| 89 |
glyph : DrawableResultFeatureSet |
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| 90 |
color : 0,204,0 |
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| 91 |
name_method : FlyNameAdapter |
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| 92 |
overlap_method : ORF_Overlap |
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| 93 |
column : GENOMIC_RANGE |
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| 94 |
column : ID |
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| 95 |
sortbycolumn : GENOMIC_RANGE |
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| 96 |
|
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| 97 |
[Type] |
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| 98 |
label : snRNA |
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| 99 |
tiername : Annotation |
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| 100 |
datatype : snRNA |
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| 101 |
glyph : DrawableResultFeatureSet |
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| 102 |
color : 0,204,0 |
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| 103 |
name_method : FlyNameAdapter |
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| 104 |
overlap_method : ORF_Overlap |
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| 105 |
column : GENOMIC_RANGE |
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| 106 |
column : ID |
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| 107 |
sortbycolumn : GENOMIC_RANGE |
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| 108 |
|
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| 109 |
[Type] |
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| 110 |
label : snoRNA |
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| 111 |
tiername : Annotation |
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| 112 |
datatype : snoRNA |
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| 113 |
glyph : DrawableResultFeatureSet |
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| 114 |
color : 0,204,0 |
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| 115 |
name_method : FlyNameAdapter |
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| 116 |
overlap_method : ORF_Overlap |
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| 117 |
column : GENOMIC_RANGE |
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| 118 |
column : ID |
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| 119 |
sortbycolumn : GENOMIC_RANGE |
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| 120 |
|
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| 121 |
[Type] |
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| 122 |
label : ncRNA |
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| 123 |
tiername : Annotation |
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| 124 |
datatype : misc. non-coding RNA |
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| 125 |
datatype : ncRNA |
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| 126 |
glyph : DrawableResultFeatureSet |
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| 127 |
color : 0,204,0 |
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| 128 |
name_method : FlyNameAdapter |
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| 129 |
overlap_method : ORF_Overlap |
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| 130 |
column : GENOMIC_RANGE |
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| 131 |
column : ID |
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| 132 |
sortbycolumn : GENOMIC_RANGE |
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| 133 |
|
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| 134 |
[Type] |
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| 135 |
label : rRNA |
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| 136 |
tiername : Annotation |
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| 137 |
datatype : rRNA |
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| 138 |
glyph : DrawableResultFeatureSet |
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| 139 |
color : 0,204,0 |
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| 140 |
name_method : FlyNameAdapter |
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| 141 |
overlap_method : ORF_Overlap |
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| 142 |
column : GENOMIC_RANGE |
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| 143 |
column : ID |
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| 144 |
sortbycolumn : GENOMIC_RANGE |
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| 145 |
|
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| 146 |
[Type] |
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| 147 |
label : miRNA |
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| 148 |
tiername : Annotation |
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| 149 |
datatype : microRNA |
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| 150 |
datatype : miRNA |
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| 151 |
glyph : DrawableResultFeatureSet |
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| 152 |
color : 0,204,0 |
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| 153 |
name_method : FlyNameAdapter |
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| 154 |
overlap_method : ORF_Overlap |
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| 155 |
column : GENOMIC_RANGE |
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| 156 |
column : ID |
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| 157 |
sortbycolumn : GENOMIC_RANGE |
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| 158 |
|
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| 159 |
[Type] |
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| 160 |
label : pseudogene |
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| 161 |
tiername : Annotation |
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| 162 |
datatype : pseudogene |
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| 163 |
glyph : DrawableResultFeatureSet |
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| 164 |
color : 153,153,255 |
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| 165 |
name_method : FlyNameAdapter |
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| 166 |
overlap_method : ORF_Overlap |
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| 167 |
column : GENOMIC_RANGE |
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| 168 |
column : ID |
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| 169 |
number_of_levels : 3 |
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| 170 |
|
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| 171 |
[Type] |
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| 172 |
label : transposable_element |
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| 173 |
tiername : Annotation |
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| 174 |
datatype : transposable_element |
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| 175 |
glyph : DoubleHeadedArrow |
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| 176 |
color : 255,0,203 |
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| 177 |
name_method : FlyNameAdapter |
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| 178 |
overlap_method : NoOverlap |
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| 179 |
column : ID |
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| 180 |
column : GENOMIC_RANGE |
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| 181 |
sortbycolumn : GENOMIC_RANGE |
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| 182 |
groupby : HOMOLOGY |
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| 183 |
warnonedit : true |
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| 184 |
number_of_levels : 1 |
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| 185 |
|
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| 186 |
|
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| 187 |
[Tier] |
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| 188 |
tiername : Other annotated features |
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| 189 |
# expand while testing |
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| 190 |
expanded : true |
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| 191 |
labeled : false |
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| 192 |
curated : true |
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| 193 |
warnonedit : true |
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| 194 |
|
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| 195 |
[Type] |
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| 196 |
label : P insertion_site |
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| 197 |
tiername : Other annotated features |
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| 198 |
datatype : p_insertion |
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| 199 |
datatype : P insertion_site |
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| 200 |
datatype : transposable_element_insertion_site |
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| 201 |
# There's an insertion_site in CG9884: P{PZ}oaf[E-32]. I assume it |
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| 202 |
# belongs in this tier. |
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| 203 |
datatype : insertion_site |
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| 204 |
glyph : Triangle |
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| 205 |
# Now hot pink--turquoise was too hard to see on aqua annotation background |
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| 206 |
color : 255,0,203 |
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| 207 |
name_method : FlyNameAdapter |
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| 208 |
overlap_method : NoOverlap |
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| 209 |
# column : SCORE |
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| 210 |
column : ID |
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| 211 |
column : GENOMIC_RANGE |
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| 212 |
column : GENOMIC_LENGTH |
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| 213 |
sortbycolumn : GENOMIC_RANGE |
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| 214 |
number_of_levels : 1 |
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| 215 |
|
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| 216 |
[Type] |
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| 217 |
label : remark |
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| 218 |
tiername : Other annotated features |
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| 219 |
datatype : miscellaneous curator's observation |
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| 220 |
datatype : remark |
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| 221 |
glyph : Zigzag |
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| 222 |
color : 255,255,204 |
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| 223 |
name_method : FlyNameAdapter |
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| 224 |
overlap_method : NoOverlap |
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| 225 |
column : GENOMIC_RANGE |
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| 226 |
column : ID |
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| 227 |
number_of_levels : 1 |
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| 228 |
|
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| 229 |
# ARGS types |
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| 230 |
[Type] |
|---|
| 231 |
label : rescue fragment |
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| 232 |
tiername : Other annotated features |
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| 233 |
datatype : rescue_fragment |
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| 234 |
glyph : ThinRectangle |
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| 235 |
color : 153,51,255 |
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| 236 |
name_method : FlyNameAdapter |
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| 237 |
overlap_method : NoOverlap |
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| 238 |
column : ID |
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| 239 |
column : GENOMIC_RANGE |
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| 240 |
column : GENOMIC_LENGTH |
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| 241 |
sortbycolumn : GENOMIC_RANGE |
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| 242 |
number_of_levels : 1 |
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| 243 |
|
|---|
| 244 |
[Type] |
|---|
| 245 |
label : point mutation |
|---|
| 246 |
tiername : Other annotated features |
|---|
| 247 |
datatype : point_mutation |
|---|
| 248 |
glyph : Triangle |
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| 249 |
color : 0,102,204 |
|---|
| 250 |
name_method : FlyNameAdapter |
|---|
| 251 |
overlap_method : NoOverlap |
|---|
| 252 |
column : ID |
|---|
| 253 |
column : GENOMIC_RANGE |
|---|
| 254 |
sortbycolumn : GENOMIC_RANGE |
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| 255 |
number_of_levels : 1 |
|---|
| 256 |
|
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| 257 |
[Type] |
|---|
| 258 |
label : protein binding site |
|---|
| 259 |
tiername : Other annotated features |
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| 260 |
datatype : protein_binding_site |
|---|
| 261 |
glyph : DrawableResultFeatureSet |
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| 262 |
color : 255,204,0 |
|---|
| 263 |
name_method : FlyNameAdapter |
|---|
| 264 |
overlap_method : NoOverlap |
|---|
| 265 |
column : ID |
|---|
| 266 |
column : GENOMIC_RANGE |
|---|
| 267 |
column : GENOMIC_LENGTH |
|---|
| 268 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 269 |
number_of_levels : 1 |
|---|
| 270 |
|
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| 271 |
[Type] |
|---|
| 272 |
label : sequence variant |
|---|
| 273 |
tiername : Other annotated features |
|---|
| 274 |
datatype : sequence_variant |
|---|
| 275 |
glyph : ThinRectangle |
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| 276 |
color : 0,153,255 |
|---|
| 277 |
name_method : FlyNameAdapter |
|---|
| 278 |
overlap_method : NoOverlap |
|---|
| 279 |
column : ID |
|---|
| 280 |
column : GENOMIC_RANGE |
|---|
| 281 |
column : GENOMIC_LENGTH |
|---|
| 282 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 283 |
number_of_levels : 1 |
|---|
| 284 |
|
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| 285 |
[Type] |
|---|
| 286 |
label : aberration junction |
|---|
| 287 |
tiername : Other annotated features |
|---|
| 288 |
datatype : aberration_junction |
|---|
| 289 |
glyph : Zigzag |
|---|
| 290 |
color : 153,0,51 |
|---|
| 291 |
name_method : FlyNameAdapter |
|---|
| 292 |
overlap_method : NoOverlap |
|---|
| 293 |
column : ID |
|---|
| 294 |
column : GENOMIC_RANGE |
|---|
| 295 |
column : GENOMIC_LENGTH |
|---|
| 296 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 297 |
number_of_levels : 1 |
|---|
| 298 |
|
|---|
| 299 |
[Type] |
|---|
| 300 |
label : regulatory region |
|---|
| 301 |
tiername : Other annotated features |
|---|
| 302 |
datatype : regulatory_region |
|---|
| 303 |
glyph : DrawableResultFeatureSet |
|---|
| 304 |
color : 102,255,255 |
|---|
| 305 |
name_method : FlyNameAdapter |
|---|
| 306 |
overlap_method : NoOverlap |
|---|
| 307 |
column : ID |
|---|
| 308 |
column : GENOMIC_RANGE |
|---|
| 309 |
column : GENOMIC_LENGTH |
|---|
| 310 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 311 |
number_of_levels : 1 |
|---|
| 312 |
|
|---|
| 313 |
[Type] |
|---|
| 314 |
label : region |
|---|
| 315 |
tiername : Other annotated features |
|---|
| 316 |
datatype : region |
|---|
| 317 |
glyph : DrawableResultFeatureSet |
|---|
| 318 |
color : 102,255,255 |
|---|
| 319 |
name_method : FlyNameAdapter |
|---|
| 320 |
overlap_method : NoOverlap |
|---|
| 321 |
column : ID |
|---|
| 322 |
column : GENOMIC_RANGE |
|---|
| 323 |
column : GENOMIC_LENGTH |
|---|
| 324 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 325 |
number_of_levels : 1 |
|---|
| 326 |
|
|---|
| 327 |
[Type] |
|---|
| 328 |
label : oligonucleotide |
|---|
| 329 |
tiername : Other annotated features |
|---|
| 330 |
datatype : oligonucleotide |
|---|
| 331 |
glyph : DrawableResultFeatureSet |
|---|
| 332 |
color : 204,102,0 |
|---|
| 333 |
name_method : FlyNameAdapter |
|---|
| 334 |
overlap_method : NoOverlap |
|---|
| 335 |
column : ID |
|---|
| 336 |
column : GENOMIC_RANGE |
|---|
| 337 |
column : GENOMIC_LENGTH |
|---|
| 338 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 339 |
number_of_levels : 1 |
|---|
| 340 |
|
|---|
| 341 |
[Type] |
|---|
| 342 |
label : DNA motif |
|---|
| 343 |
tiername : Other annotated features |
|---|
| 344 |
datatype : DNA_motif |
|---|
| 345 |
glyph : ThinRectangle |
|---|
| 346 |
color : 102,102,102 |
|---|
| 347 |
name_method : FlyNameAdapter |
|---|
| 348 |
overlap_method : NoOverlap |
|---|
| 349 |
column : ID |
|---|
| 350 |
column : GENOMIC_RANGE |
|---|
| 351 |
column : GENOMIC_LENGTH |
|---|
| 352 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 353 |
number_of_levels : 1 |
|---|
| 354 |
|
|---|
| 355 |
[Type] |
|---|
| 356 |
label : enhancer |
|---|
| 357 |
tiername : Other annotated features |
|---|
| 358 |
datatype : enhancer |
|---|
| 359 |
glyph : DrawableResultFeatureSet |
|---|
| 360 |
color : 255,153,255 |
|---|
| 361 |
name_method : FlyNameAdapter |
|---|
| 362 |
overlap_method : NoOverlap |
|---|
| 363 |
column : ID |
|---|
| 364 |
column : GENOMIC_RANGE |
|---|
| 365 |
column : GENOMIC_LENGTH |
|---|
| 366 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 367 |
number_of_levels : 1 |
|---|
| 368 |
|
|---|
| 369 |
[Type] |
|---|
| 370 |
label : mature peptide |
|---|
| 371 |
tiername : Other annotated features |
|---|
| 372 |
datatype : mature_peptide |
|---|
| 373 |
glyph : DrawableResultFeatureSet |
|---|
| 374 |
color : 102,102,255 |
|---|
| 375 |
column : ID |
|---|
| 376 |
name_method : FlyNameAdapter |
|---|
| 377 |
overlap_method : NoOverlap |
|---|
| 378 |
column : GENOMIC_RANGE |
|---|
| 379 |
number_of_levels : 1 |
|---|
| 380 |
|
|---|
| 381 |
[Type] |
|---|
| 382 |
label : signal peptide |
|---|
| 383 |
tiername : Other annotated features |
|---|
| 384 |
datatype : signal_peptide |
|---|
| 385 |
glyph : DrawableResultFeatureSet |
|---|
| 386 |
color : 153,153,255 |
|---|
| 387 |
name_method : FlyNameAdapter |
|---|
| 388 |
overlap_method : NoOverlap |
|---|
| 389 |
column : ID |
|---|
| 390 |
column : GENOMIC_RANGE |
|---|
| 391 |
number_of_levels : 1 |
|---|
| 392 |
|
|---|
| 393 |
# This tier is for showing new analysis results that you layer on with |
|---|
| 394 |
# "Add analysis result". I tried putting it at the beginning (before the |
|---|
| 395 |
# Annotation tier) but that led to a weird display bug. |
|---|
| 396 |
[Tier] |
|---|
| 397 |
tiername : New analysis results |
|---|
| 398 |
expanded : true |
|---|
| 399 |
labeled : true |
|---|
| 400 |
|
|---|
| 401 |
[Type] |
|---|
| 402 |
label : New analysis results |
|---|
| 403 |
tiername : New analysis results |
|---|
| 404 |
glyph : DrawableResultFeatureSet |
|---|
| 405 |
color : 255,255,0 |
|---|
| 406 |
usescore : true |
|---|
| 407 |
column : SCORE |
|---|
| 408 |
column : GENOMIC_RANGE |
|---|
| 409 |
column : MATCH_RANGE |
|---|
| 410 |
column : GENOMIC_LENGTH |
|---|
| 411 |
column : MATCH_LENGTH |
|---|
| 412 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 413 |
|
|---|
| 414 |
[Tier] |
|---|
| 415 |
tiername : sequence |
|---|
| 416 |
expanded : true |
|---|
| 417 |
labeled : true |
|---|
| 418 |
|
|---|
| 419 |
[Type] |
|---|
| 420 |
label : sequence |
|---|
| 421 |
tiername : sequence |
|---|
| 422 |
datatype : sequence:dummy |
|---|
| 423 |
glyph : DrawableResultFeatureSet |
|---|
| 424 |
color : 51,102,255 |
|---|
| 425 |
usescore : false |
|---|
| 426 |
column : GENOMIC_RANGE |
|---|
| 427 |
column : ID |
|---|
| 428 |
|
|---|
| 429 |
[Tier] |
|---|
| 430 |
tiername : Previous Releases |
|---|
| 431 |
# Sima and Andy prefer these collapsed |
|---|
| 432 |
expanded : false |
|---|
| 433 |
|
|---|
| 434 |
[Type] |
|---|
| 435 |
label : Release 2 GadFly |
|---|
| 436 |
tiername : Previous Releases |
|---|
| 437 |
datatype : sim4:na_gadfly.dros |
|---|
| 438 |
datatype : sim4:na_gadfly.dros.RELEASE2 |
|---|
| 439 |
glyph : DrawableResultFeatureSet |
|---|
| 440 |
color : 153,255,255 |
|---|
| 441 |
usescore : true |
|---|
| 442 |
column : SCORE |
|---|
| 443 |
column : GENOMIC_RANGE |
|---|
| 444 |
column : MATCH_RANGE |
|---|
| 445 |
column : GENOMIC_LENGTH |
|---|
| 446 |
column : MATCH_LENGTH |
|---|
| 447 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 448 |
|
|---|
| 449 |
[Type] |
|---|
| 450 |
label : Release 3.1 GadFly |
|---|
| 451 |
tiername : Previous Releases |
|---|
| 452 |
datatype : sim4:na_transcript.dmel.RELEASE31 |
|---|
| 453 |
glyph : DrawableResultFeatureSet |
|---|
| 454 |
color : 0,204,255 |
|---|
| 455 |
usescore : true |
|---|
| 456 |
column : SCORE |
|---|
| 457 |
column : GENOMIC_RANGE |
|---|
| 458 |
column : MATCH_RANGE |
|---|
| 459 |
column : GENOMIC_LENGTH |
|---|
| 460 |
column : MATCH_LENGTH |
|---|
| 461 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 462 |
|
|---|
| 463 |
[Type] |
|---|
| 464 |
label : Release 3.2 GadFly |
|---|
| 465 |
tiername : Previous Releases |
|---|
| 466 |
datatype : sim4:na_transcript.dmel.RELEASE32 |
|---|
| 467 |
datatype : sim4_na_het_transcript.dmel.RELEASE32 |
|---|
| 468 |
glyph : DrawableResultFeatureSet |
|---|
| 469 |
color : 0,153,153 |
|---|
| 470 |
usescore : true |
|---|
| 471 |
column : SCORE |
|---|
| 472 |
column : GENOMIC_RANGE |
|---|
| 473 |
column : MATCH_RANGE |
|---|
| 474 |
column : GENOMIC_LENGTH |
|---|
| 475 |
column : MATCH_LENGTH |
|---|
| 476 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 477 |
|
|---|
| 478 |
[Tier] |
|---|
| 479 |
tiername : Gene Prediction |
|---|
| 480 |
expanded : true |
|---|
| 481 |
|
|---|
| 482 |
[Type] |
|---|
| 483 |
label : Genie |
|---|
| 484 |
tiername : Gene Prediction |
|---|
| 485 |
datatype : piecegenie |
|---|
| 486 |
datatype : piecegenie:dummy |
|---|
| 487 |
datatype : genie_masked:dummy |
|---|
| 488 |
glyph : DrawableResultFeatureSet |
|---|
| 489 |
color : 153,51,255 |
|---|
| 490 |
usescore : true |
|---|
| 491 |
minscore : 100.0 |
|---|
| 492 |
column : SCORE |
|---|
| 493 |
column : GENOMIC_RANGE |
|---|
| 494 |
column : query_frame |
|---|
| 495 |
column : GENOMIC_LENGTH |
|---|
| 496 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 497 |
|
|---|
| 498 |
[Type] |
|---|
| 499 |
label : Genscan |
|---|
| 500 |
tiername : Gene Prediction |
|---|
| 501 |
datatype : genscan:dummy |
|---|
| 502 |
datatype : genscan_masked:dummy |
|---|
| 503 |
datatype : genscan_masked |
|---|
| 504 |
datatype : genscan |
|---|
| 505 |
glyph : DrawableResultFeatureSet |
|---|
| 506 |
color : 204,153,255 |
|---|
| 507 |
usescore : true |
|---|
| 508 |
minscore : -1.0 |
|---|
| 509 |
maxscore : 50.0 |
|---|
| 510 |
column : SCORE |
|---|
| 511 |
column : GENOMIC_RANGE |
|---|
| 512 |
column : query_frame |
|---|
| 513 |
column : GENOMIC_LENGTH |
|---|
| 514 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 515 |
|
|---|
| 516 |
[Type] |
|---|
| 517 |
label : GENMARK |
|---|
| 518 |
tiername : Gene Prediction |
|---|
| 519 |
datatype : genemark |
|---|
| 520 |
datatype : genemark:dummy |
|---|
| 521 |
datatype : genemark_masked |
|---|
| 522 |
datatype : genemark_masked:dummy |
|---|
| 523 |
datatype : GeneMark |
|---|
| 524 |
datatype : pred_gff:GeneMark |
|---|
| 525 |
glyph : DrawableResultFeatureSet |
|---|
| 526 |
color : 103,155,104 |
|---|
| 527 |
column : SCORE |
|---|
| 528 |
column : GENOMIC_RANGE |
|---|
| 529 |
column : query_frame |
|---|
| 530 |
column : GENOMIC_LENGTH |
|---|
| 531 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 532 |
|
|---|
| 533 |
|
|---|
| 534 |
[Type] |
|---|
| 535 |
label : SNAP |
|---|
| 536 |
tiername : Gene Prediction |
|---|
| 537 |
datatype : snap |
|---|
| 538 |
datatype : snap:dummy |
|---|
| 539 |
datatype : snap_masked |
|---|
| 540 |
datatype : snap_masked:dummy |
|---|
| 541 |
glyph : DrawableResultFeatureSet |
|---|
| 542 |
color : 153,255,204 |
|---|
| 543 |
column : SCORE |
|---|
| 544 |
column : GENOMIC_RANGE |
|---|
| 545 |
column : query_frame |
|---|
| 546 |
column : GENOMIC_LENGTH |
|---|
| 547 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 548 |
|
|---|
| 549 |
[Type] |
|---|
| 550 |
label : Fgenesh |
|---|
| 551 |
tiername : Gene Prediction |
|---|
| 552 |
datatype : fgenesh |
|---|
| 553 |
datatype : fgenesh:dummy |
|---|
| 554 |
datatype : fgenesh_masked |
|---|
| 555 |
datatype : fgenesh_masked:dummy |
|---|
| 556 |
glyph : DrawableResultFeatureSet |
|---|
| 557 |
color : 255,153,255 |
|---|
| 558 |
usescore : true |
|---|
| 559 |
minscore : 100.0 |
|---|
| 560 |
column : SCORE |
|---|
| 561 |
column : GENOMIC_RANGE |
|---|
| 562 |
column : query_frame |
|---|
| 563 |
column : GENOMIC_LENGTH |
|---|
| 564 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 565 |
|
|---|
| 566 |
# New in CG16983 example of 8/17/2005 |
|---|
| 567 |
[Type] |
|---|
| 568 |
label : augustus |
|---|
| 569 |
tiername : Gene Prediction |
|---|
| 570 |
datatype : augustus |
|---|
| 571 |
datatype : augustus:dummy |
|---|
| 572 |
datatype : augustus_masked |
|---|
| 573 |
datatype : augustus_masked:dummy |
|---|
| 574 |
glyph : DrawableResultFeatureSet |
|---|
| 575 |
color : 255,204,255 |
|---|
| 576 |
column : SCORE |
|---|
| 577 |
column : GENOMIC_RANGE |
|---|
| 578 |
column : query_frame |
|---|
| 579 |
column : GENOMIC_LENGTH |
|---|
| 580 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 581 |
|
|---|
| 582 |
[Tier] |
|---|
| 583 |
tiername : Third Party Annotation |
|---|
| 584 |
expanded : true |
|---|
| 585 |
|
|---|
| 586 |
[Type] |
|---|
| 587 |
label : RNAi verified fgenesh |
|---|
| 588 |
tiername : Third Party Annotation |
|---|
| 589 |
datatype : sim4:na_HDP_RNAi.dmel |
|---|
| 590 |
datatype : RNAiHDP:dummy |
|---|
| 591 |
glyph : DrawableResultFeatureSet |
|---|
| 592 |
color : 255,255,51 |
|---|
| 593 |
usescore : true |
|---|
| 594 |
minscore : 100.0 |
|---|
| 595 |
column : SCORE |
|---|
| 596 |
column : GENOMIC_RANGE |
|---|
| 597 |
column : MATCH_RANGE |
|---|
| 598 |
column : GENOMIC_LENGTH |
|---|
| 599 |
column : MATCH_LENGTH |
|---|
| 600 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 601 |
|
|---|
| 602 |
[Type] |
|---|
| 603 |
label : Heidelberg FlyArray fgenesh |
|---|
| 604 |
tiername : Third Party Annotation |
|---|
| 605 |
datatype : HDP:dummy |
|---|
| 606 |
datatype : sim4:na_gb.tpa.dmel |
|---|
| 607 |
glyph : DrawableResultFeatureSet |
|---|
| 608 |
color : 255,153,153 |
|---|
| 609 |
usescore : true |
|---|
| 610 |
minscore : 100.0 |
|---|
| 611 |
column : SCORE |
|---|
| 612 |
column : GENOMIC_RANGE |
|---|
| 613 |
column : MATCH_RANGE |
|---|
| 614 |
column : GENOMIC_LENGTH |
|---|
| 615 |
column : MATCH_LENGTH |
|---|
| 616 |
column : query_frame |
|---|
| 617 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 618 |
|
|---|
| 619 |
[Tier] |
|---|
| 620 |
tiername : Transposon result |
|---|
| 621 |
expanded : true |
|---|
| 622 |
|
|---|
| 623 |
[Type] |
|---|
| 624 |
label : Transposon result |
|---|
| 625 |
tiername : Transposon result |
|---|
| 626 |
datatype : JOSHTRANSPOSON:Sept |
|---|
| 627 |
datatype : BDGP_TE:092002 |
|---|
| 628 |
datatype : transposable_element |
|---|
| 629 |
glyph : DoubleHeadedArrow |
|---|
| 630 |
color : 255,0,203 |
|---|
| 631 |
annot_type : transposable_element |
|---|
| 632 |
column : NAME |
|---|
| 633 |
column : SCORE |
|---|
| 634 |
column : GENOMIC_RANGE |
|---|
| 635 |
column : GENOMIC_LENGTH |
|---|
| 636 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 637 |
groupby : HOMOLOGY |
|---|
| 638 |
|
|---|
| 639 |
[Tier] |
|---|
| 640 |
tiername : Fly Sequence |
|---|
| 641 |
expanded : true |
|---|
| 642 |
|
|---|
| 643 |
[Type] |
|---|
| 644 |
label : Community GB |
|---|
| 645 |
tiername : Fly Sequence |
|---|
| 646 |
datatype : sim4tandem:na_gb.dmel |
|---|
| 647 |
datatype : sim4_na_gb.dmel |
|---|
| 648 |
datatype : sim4:na_ARGs.dros |
|---|
| 649 |
datatype : sim4:na_gb.dros |
|---|
| 650 |
#datatype : sim4:na_gb.dros.02-21-02_to_01-14-03 |
|---|
| 651 |
#datatype : mapgb:na_gb.dros |
|---|
| 652 |
#datatype : sim4:na_Adh.dros |
|---|
| 653 |
#datatype : sim4:na_adh.cDNAs.dros |
|---|
| 654 |
#datatype : sim4:na_ARGsCDS.dros |
|---|
| 655 |
glyph : DrawableResultFeatureSet |
|---|
| 656 |
color : 0,240,0 |
|---|
| 657 |
usescore : true |
|---|
| 658 |
column : SCORE |
|---|
| 659 |
column : GENOMIC_RANGE |
|---|
| 660 |
column : MATCH_RANGE |
|---|
| 661 |
column : GENOMIC_LENGTH |
|---|
| 662 |
column : MATCH_LENGTH |
|---|
| 663 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 664 |
groupby : HOMOLOGY |
|---|
| 665 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 666 |
|
|---|
| 667 |
[Type] |
|---|
| 668 |
label : NCBI fly cDNAs |
|---|
| 669 |
tiername : Fly Sequence |
|---|
| 670 |
datatype : splign:na_cDNA_ncbi |
|---|
| 671 |
glyph : DrawableResultFeatureSet |
|---|
| 672 |
color : 0,153,0 |
|---|
| 673 |
usescore : true |
|---|
| 674 |
column : SCORE |
|---|
| 675 |
column : GENOMIC_RANGE |
|---|
| 676 |
column : MATCH_RANGE |
|---|
| 677 |
column : GENOMIC_LENGTH |
|---|
| 678 |
column : MATCH_LENGTH |
|---|
| 679 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 680 |
groupby : HOMOLOGY |
|---|
| 681 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 682 |
|
|---|
| 683 |
|
|---|
| 684 |
[Tier] |
|---|
| 685 |
tiername : ARGS |
|---|
| 686 |
expanded : true |
|---|
| 687 |
visible : false |
|---|
| 688 |
|
|---|
| 689 |
[Type] |
|---|
| 690 |
label : ARGS genomic |
|---|
| 691 |
tiername : ARGS |
|---|
| 692 |
datatype : sim4:na_ARGs.dros |
|---|
| 693 |
glyph : DrawableResultFeatureSet |
|---|
| 694 |
color : 0,154,97 |
|---|
| 695 |
usescore : true |
|---|
| 696 |
column : SCORE |
|---|
| 697 |
column : GENOMIC_RANGE |
|---|
| 698 |
column : MATCH_RANGE |
|---|
| 699 |
column : GENOMIC_LENGTH |
|---|
| 700 |
column : MATCH_LENGTH |
|---|
| 701 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 702 |
groupby : HOMOLOGY |
|---|
| 703 |
|
|---|
| 704 |
[Type] |
|---|
| 705 |
label : ARGS CDS |
|---|
| 706 |
tiername : ARGS |
|---|
| 707 |
datatype : sim4:na_ARGsCDS.dros |
|---|
| 708 |
glyph : DrawableResultFeatureSet |
|---|
| 709 |
color : 0,154,97 |
|---|
| 710 |
usescore : true |
|---|
| 711 |
column : SCORE |
|---|
| 712 |
column : GENOMIC_RANGE |
|---|
| 713 |
column : MATCH_RANGE |
|---|
| 714 |
column : GENOMIC_LENGTH |
|---|
| 715 |
column : MATCH_LENGTH |
|---|
| 716 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 717 |
groupby : HOMOLOGY |
|---|
| 718 |
|
|---|
| 719 |
[Tier] |
|---|
| 720 |
tiername : Fly EST |
|---|
| 721 |
expanded : true |
|---|
| 722 |
|
|---|
| 723 |
[Type] |
|---|
| 724 |
label : EST ncbi |
|---|
| 725 |
tiername : Fly EST |
|---|
| 726 |
datatype : splign:na_EST_ncbi |
|---|
| 727 |
glyph : DrawableResultFeatureSet |
|---|
| 728 |
color : 102,255,102 |
|---|
| 729 |
usescore : true |
|---|
| 730 |
column : NAME |
|---|
| 731 |
column : SCORE |
|---|
| 732 |
column : GENOMIC_RANGE |
|---|
| 733 |
column : MATCH_RANGE |
|---|
| 734 |
column : GENOMIC_LENGTH |
|---|
| 735 |
column : MATCH_LENGTH |
|---|
| 736 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 737 |
groupby : HOMOLOGY |
|---|
| 738 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 739 |
|
|---|
| 740 |
[Type] |
|---|
| 741 |
label : EST Same Strain |
|---|
| 742 |
tiername : Fly EST |
|---|
| 743 |
datatype : sim4:na_dbEST.same.dmel |
|---|
| 744 |
datatype : sim4_na_dbEST.same.dmel |
|---|
| 745 |
glyph : DrawableResultFeatureSet |
|---|
| 746 |
color : 153,255,153 |
|---|
| 747 |
usescore : true |
|---|
| 748 |
column : NAME |
|---|
| 749 |
column : SCORE |
|---|
| 750 |
column : GENOMIC_RANGE |
|---|
| 751 |
column : MATCH_RANGE |
|---|
| 752 |
column : GENOMIC_LENGTH |
|---|
| 753 |
column : MATCH_LENGTH |
|---|
| 754 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 755 |
groupby : HOMOLOGY |
|---|
| 756 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 757 |
|
|---|
| 758 |
[Type] |
|---|
| 759 |
label : EST Different Strain |
|---|
| 760 |
tiername : Fly EST |
|---|
| 761 |
datatype : sim4:na_dbEST.diff.dmel |
|---|
| 762 |
datatype : sim4_na_dbEST.diff.dmel |
|---|
| 763 |
glyph : DrawableResultFeatureSet |
|---|
| 764 |
color : 255,255,153 |
|---|
| 765 |
usescore : true |
|---|
| 766 |
column : NAME |
|---|
| 767 |
column : SCORE |
|---|
| 768 |
column : GENOMIC_RANGE |
|---|
| 769 |
column : MATCH_RANGE |
|---|
| 770 |
column : GENOMIC_LENGTH |
|---|
| 771 |
column : MATCH_LENGTH |
|---|
| 772 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 773 |
groupby : HOMOLOGY |
|---|
| 774 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 775 |
|
|---|
| 776 |
[Tier] |
|---|
| 777 |
tiername : Non-coding RNA |
|---|
| 778 |
expanded : true |
|---|
| 779 |
|
|---|
| 780 |
[Type] |
|---|
| 781 |
label : tRNA-result |
|---|
| 782 |
tiername : Non-coding RNA |
|---|
| 783 |
datatype : trnascan-se:dummy |
|---|
| 784 |
datatype : tRNAscan-se |
|---|
| 785 |
glyph : DrawableResultFeatureSet |
|---|
| 786 |
color : 204,255,51 |
|---|
| 787 |
annot_type : tRNA |
|---|
| 788 |
usescore : true |
|---|
| 789 |
column : SCORE |
|---|
| 790 |
column : GENOMIC_RANGE |
|---|
| 791 |
column : MATCH_RANGE |
|---|
| 792 |
column : trna_type |
|---|
| 793 |
column : anticodon |
|---|
| 794 |
sortbycolumn : SCORE |
|---|
| 795 |
|
|---|
| 796 |
[Type] |
|---|
| 797 |
label : Non-coding RNA |
|---|
| 798 |
tiername : Non-coding RNA |
|---|
| 799 |
datatype : sim4:na_smallRNA.dros |
|---|
| 800 |
glyph : DrawableResultFeatureSet |
|---|
| 801 |
color : 50,255,10 |
|---|
| 802 |
usescore : true |
|---|
| 803 |
column : SCORE |
|---|
| 804 |
column : GENOMIC_RANGE |
|---|
| 805 |
column : MATCH_RANGE |
|---|
| 806 |
column : query_frame |
|---|
| 807 |
sortbycolumn : SCORE |
|---|
| 808 |
groupby : HOMOLOGY |
|---|
| 809 |
|
|---|
| 810 |
[Tier] |
|---|
| 811 |
tiername : BLASTX Similarity to Fly |
|---|
| 812 |
expanded : true |
|---|
| 813 |
|
|---|
| 814 |
[Type] |
|---|
| 815 |
label : BLASTX Similarity to Fly |
|---|
| 816 |
tiername : BLASTX Similarity to Fly |
|---|
| 817 |
datatype : blastx_masked:aa_SPTR.dros |
|---|
| 818 |
datatype : blastx_masked:aa_SPTR.dmel |
|---|
| 819 |
datatype : blastx:aa_SPTR.dros |
|---|
| 820 |
datatype : blastx:aa_SPTR.dmel |
|---|
| 821 |
datatype : blastx_masked:aa_TR.real.dros |
|---|
| 822 |
datatype : blastx_masked:aa_SP.real.dros |
|---|
| 823 |
datatype : blastx_masked:aa_SP.hyp.dros |
|---|
| 824 |
glyph : DrawableResultFeatureSet |
|---|
| 825 |
color : 255,20,0 |
|---|
| 826 |
usescore : true |
|---|
| 827 |
column : SCORE |
|---|
| 828 |
column : identity |
|---|
| 829 |
column : expect |
|---|
| 830 |
column : query_frame |
|---|
| 831 |
column : GENOMIC_RANGE |
|---|
| 832 |
column : MATCH_RANGE |
|---|
| 833 |
column : GENOMIC_LENGTH |
|---|
| 834 |
column : MATCH_LENGTH |
|---|
| 835 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 836 |
groupby : HOMOLOGY |
|---|
| 837 |
freshdate : Sat Jan 1 00:00:00 PST 2005 |
|---|
| 838 |
|
|---|
| 839 |
[Type] |
|---|
| 840 |
label : NCBI fly proteins |
|---|
| 841 |
tiername : BLASTX Similarity to Fly |
|---|
| 842 |
datatype : prosplign:aa_ncbi_dmel |
|---|
| 843 |
glyph : DrawableResultFeatureSet |
|---|
| 844 |
color : 255,153,153 |
|---|
| 845 |
usescore : true |
|---|
| 846 |
column : SCORE |
|---|
| 847 |
column : identity |
|---|
| 848 |
column : expect |
|---|
| 849 |
column : query_frame |
|---|
| 850 |
column : GENOMIC_RANGE |
|---|
| 851 |
column : MATCH_RANGE |
|---|
| 852 |
column : GENOMIC_LENGTH |
|---|
| 853 |
column : MATCH_LENGTH |
|---|
| 854 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 855 |
groupby : HOMOLOGY |
|---|
| 856 |
freshdate : Sat Jan 1 00:00:00 PST 2005 |
|---|
| 857 |
|
|---|
| 858 |
[Type] |
|---|
| 859 |
label : BLASTX to Community Error Report |
|---|
| 860 |
tiername : BLASTX Similarity to Fly |
|---|
| 861 |
datatype : blastx:aa_users_i.dros |
|---|
| 862 |
datatype : blastx_masked:aa_users_i.dros |
|---|
| 863 |
glyph : DrawableResultFeatureSet |
|---|
| 864 |
color : 255,250,10 |
|---|
| 865 |
usescore : true |
|---|
| 866 |
column : SCORE |
|---|
| 867 |
column : identity |
|---|
| 868 |
column : expect |
|---|
| 869 |
column : query_frame |
|---|
| 870 |
column : GENOMIC_RANGE |
|---|
| 871 |
column : MATCH_RANGE |
|---|
| 872 |
column : GENOMIC_LENGTH |
|---|
| 873 |
column : MATCH_LENGTH |
|---|
| 874 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 875 |
|
|---|
| 876 |
[Tier] |
|---|
| 877 |
tiername : Putative Ortholog |
|---|
| 878 |
expanded : true |
|---|
| 879 |
|
|---|
| 880 |
[Type] |
|---|
| 881 |
label : Dpse Ortholog |
|---|
| 882 |
tiername : Putative Ortholog |
|---|
| 883 |
datatype : syntenicblock:dummy |
|---|
| 884 |
glyph : DrawableResultFeatureSet |
|---|
| 885 |
color : 255,102,153 |
|---|
| 886 |
column : GENOMIC_LENGTH |
|---|
| 887 |
column : MATCH_LENGTH |
|---|
| 888 |
column : GENOMIC_RANGE |
|---|
| 889 |
column : MATCH_RANGE |
|---|
| 890 |
column : SCORE |
|---|
| 891 |
|
|---|
| 892 |
[Tier] |
|---|
| 893 |
tiername : TBLASTX to Insects |
|---|
| 894 |
expanded : true |
|---|
| 895 |
|
|---|
| 896 |
[Type] |
|---|
| 897 |
label : Dpse genomic |
|---|
| 898 |
tiername : TBLASTX to Insects |
|---|
| 899 |
datatype : tblastxwrap_masked:na_baylorf1_scfchunk.dpse |
|---|
| 900 |
glyph : DrawableResultFeatureSet |
|---|
| 901 |
color : 255,102,51 |
|---|
| 902 |
usescore : true |
|---|
| 903 |
column : SCORE |
|---|
| 904 |
column : identity |
|---|
| 905 |
column : expect |
|---|
| 906 |
column : query_frame |
|---|
| 907 |
column : GENOMIC_RANGE |
|---|
| 908 |
column : MATCH_RANGE |
|---|
| 909 |
column : GENOMIC_LENGTH |
|---|
| 910 |
column : MATCH_LENGTH |
|---|
| 911 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 912 |
groupby : HOMOLOGY |
|---|
| 913 |
|
|---|
| 914 |
[Type] |
|---|
| 915 |
label : Agam genomic |
|---|
| 916 |
tiername : TBLASTX to Insects |
|---|
| 917 |
datatype : tblastx_nf:na_scf_chunk_agambiae.fa |
|---|
| 918 |
datatype : tblastx_ne:na_scf_chunk_agambiae.fa |
|---|
| 919 |
datatype : tblastxwrap_masked:na_scf_chunk_agambiae.fa |
|---|
| 920 |
glyph : DrawableResultFeatureSet |
|---|
| 921 |
color : 255,204,102 |
|---|
| 922 |
usescore : true |
|---|
| 923 |
column : SCORE |
|---|
| 924 |
column : identity |
|---|
| 925 |
column : expect |
|---|
| 926 |
column : query_frame |
|---|
| 927 |
column : GENOMIC_RANGE |
|---|
| 928 |
column : MATCH_RANGE |
|---|
| 929 |
column : GENOMIC_LENGTH |
|---|
| 930 |
column : MATCH_LENGTH |
|---|
| 931 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 932 |
groupby : HOMOLOGY |
|---|
| 933 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 934 |
|
|---|
| 935 |
[Type] |
|---|
| 936 |
label : Insect dbEST |
|---|
| 937 |
tiername : TBLASTX to Insects |
|---|
| 938 |
datatype : tblastx:na_dbEST.insect |
|---|
| 939 |
datatype : tblastx_masked:na_dbEST.insect |
|---|
| 940 |
glyph : DrawableResultFeatureSet |
|---|
| 941 |
color : 255,255,153 |
|---|
| 942 |
usescore : true |
|---|
| 943 |
column : SCORE |
|---|
| 944 |
column : identity |
|---|
| 945 |
column : expect |
|---|
| 946 |
column : query_frame |
|---|
| 947 |
column : GENOMIC_RANGE |
|---|
| 948 |
column : MATCH_RANGE |
|---|
| 949 |
column : GENOMIC_LENGTH |
|---|
| 950 |
column : MATCH_LENGTH |
|---|
| 951 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 952 |
groupby : HOMOLOGY |
|---|
| 953 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 954 |
|
|---|
| 955 |
[Tier] |
|---|
| 956 |
tiername : BLASTX Similarity to Other Species |
|---|
| 957 |
expanded : true |
|---|
| 958 |
|
|---|
| 959 |
[Type] |
|---|
| 960 |
label : NCBI non mel |
|---|
| 961 |
tiername : BLASTX Similarity to Other Species |
|---|
| 962 |
datatype : prosplign:aa_ncbi_other |
|---|
| 963 |
glyph : DrawableResultFeatureSet |
|---|
| 964 |
color : 204,102,0 |
|---|
| 965 |
usescore : true |
|---|
| 966 |
column : SCORE |
|---|
| 967 |
column : identity |
|---|
| 968 |
column : expect |
|---|
| 969 |
column : query_frame |
|---|
| 970 |
column : GENOMIC_RANGE |
|---|
| 971 |
column : MATCH_RANGE |
|---|
| 972 |
column : GENOMIC_LENGTH |
|---|
| 973 |
column : MATCH_LENGTH |
|---|
| 974 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 975 |
groupby : HOMOLOGY |
|---|
| 976 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 977 |
|
|---|
| 978 |
[Type] |
|---|
| 979 |
label : Worm |
|---|
| 980 |
tiername : BLASTX Similarity to Other Species |
|---|
| 981 |
datatype : blastx_masked:aa_SPTR.worm |
|---|
| 982 |
datatype : blastx:aa_SPTR.worm |
|---|
| 983 |
glyph : DrawableResultFeatureSet |
|---|
| 984 |
color : 255,153,0 |
|---|
| 985 |
usescore : true |
|---|
| 986 |
column : SCORE |
|---|
| 987 |
column : identity |
|---|
| 988 |
column : expect |
|---|
| 989 |
column : query_frame |
|---|
| 990 |
column : GENOMIC_RANGE |
|---|
| 991 |
column : MATCH_RANGE |
|---|
| 992 |
column : GENOMIC_LENGTH |
|---|
| 993 |
column : MATCH_LENGTH |
|---|
| 994 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 995 |
groupby : HOMOLOGY |
|---|
| 996 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 997 |
|
|---|
| 998 |
[Type] |
|---|
| 999 |
label : Primate |
|---|
| 1000 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1001 |
datatype : blastx_masked:aa_SPTR.primate |
|---|
| 1002 |
datatype : blastx:aa_SPTR.primate |
|---|
| 1003 |
glyph : DrawableResultFeatureSet |
|---|
| 1004 |
color : 255,153,0 |
|---|
| 1005 |
usescore : true |
|---|
| 1006 |
column : SCORE |
|---|
| 1007 |
column : identity |
|---|
| 1008 |
column : expect |
|---|
| 1009 |
column : query_frame |
|---|
| 1010 |
column : GENOMIC_RANGE |
|---|
| 1011 |
column : MATCH_RANGE |
|---|
| 1012 |
column : GENOMIC_LENGTH |
|---|
| 1013 |
column : MATCH_LENGTH |
|---|
| 1014 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1015 |
groupby : HOMOLOGY |
|---|
| 1016 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1017 |
[Type] |
|---|
| 1018 |
label : Rodent |
|---|
| 1019 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1020 |
datatype : tblastx:na_unigene.rodent |
|---|
| 1021 |
datatype : blastx_masked:aa_SPTR.rodent |
|---|
| 1022 |
datatype : blastx:aa_SPTR.rodent |
|---|
| 1023 |
glyph : DrawableResultFeatureSet |
|---|
| 1024 |
color : 255,153,0 |
|---|
| 1025 |
usescore : true |
|---|
| 1026 |
column : SCORE |
|---|
| 1027 |
column : identity |
|---|
| 1028 |
column : expect |
|---|
| 1029 |
column : query_frame |
|---|
| 1030 |
column : GENOMIC_RANGE |
|---|
| 1031 |
column : MATCH_RANGE |
|---|
| 1032 |
column : GENOMIC_LENGTH |
|---|
| 1033 |
column : MATCH_LENGTH |
|---|
| 1034 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1035 |
groupby : HOMOLOGY |
|---|
| 1036 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1037 |
|
|---|
| 1038 |
[Type] |
|---|
| 1039 |
label : Yeast |
|---|
| 1040 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1041 |
datatype : blastx_masked:aa_SPTR.yeast |
|---|
| 1042 |
datatype : blastx:aa_SPTR.yeast |
|---|
| 1043 |
glyph : DrawableResultFeatureSet |
|---|
| 1044 |
color : 255,153,0 |
|---|
| 1045 |
usescore : true |
|---|
| 1046 |
column : SCORE |
|---|
| 1047 |
column : identity |
|---|
| 1048 |
column : expect |
|---|
| 1049 |
column : query_frame |
|---|
| 1050 |
column : GENOMIC_RANGE |
|---|
| 1051 |
column : MATCH_RANGE |
|---|
| 1052 |
column : GENOMIC_LENGTH |
|---|
| 1053 |
column : MATCH_LENGTH |
|---|
| 1054 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1055 |
groupby : HOMOLOGY |
|---|
| 1056 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1057 |
[Type] |
|---|
| 1058 |
label : Plant |
|---|
| 1059 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1060 |
datatype : blastx_masked:aa_SPTR.plant |
|---|
| 1061 |
datatype : blastx_masked_aa_SPTR.plant |
|---|
| 1062 |
datatype : blastx:aa_SPTR.plant |
|---|
| 1063 |
glyph : DrawableResultFeatureSet |
|---|
| 1064 |
color : 255,153,0 |
|---|
| 1065 |
usescore : true |
|---|
| 1066 |
column : SCORE |
|---|
| 1067 |
column : expect |
|---|
| 1068 |
column : identity |
|---|
| 1069 |
column : query_frame |
|---|
| 1070 |
column : GENOMIC_RANGE |
|---|
| 1071 |
column : MATCH_RANGE |
|---|
| 1072 |
column : GENOMIC_LENGTH |
|---|
| 1073 |
column : MATCH_LENGTH |
|---|
| 1074 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1075 |
groupby : HOMOLOGY |
|---|
| 1076 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1077 |
|
|---|
| 1078 |
[Type] |
|---|
| 1079 |
label : Insect |
|---|
| 1080 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1081 |
datatype : tblastx:na_dbEST.insect |
|---|
| 1082 |
datatype : tblastx_masked:na_dbEST.insect |
|---|
| 1083 |
datatype : blastx_masked:aa_SPTR.insect |
|---|
| 1084 |
datatype : blastx:aa_SPTR.insect |
|---|
| 1085 |
glyph : DrawableResultFeatureSet |
|---|
| 1086 |
color : 255,153,0 |
|---|
| 1087 |
usescore : true |
|---|
| 1088 |
column : SCORE |
|---|
| 1089 |
column : identity |
|---|
| 1090 |
column : expect |
|---|
| 1091 |
column : query_frame |
|---|
| 1092 |
column : GENOMIC_RANGE |
|---|
| 1093 |
column : MATCH_RANGE |
|---|
| 1094 |
column : GENOMIC_LENGTH |
|---|
| 1095 |
column : MATCH_LENGTH |
|---|
| 1096 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1097 |
groupby : HOMOLOGY |
|---|
| 1098 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1099 |
|
|---|
| 1100 |
[Type] |
|---|
| 1101 |
label : Other Vertebrates |
|---|
| 1102 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1103 |
datatype : blastx_masked:aa_SPTR.othvert |
|---|
| 1104 |
datatype : blastx:aa_SPTR.othvert |
|---|
| 1105 |
glyph : DrawableResultFeatureSet |
|---|
| 1106 |
color : 255,153,0 |
|---|
| 1107 |
usescore : true |
|---|
| 1108 |
column : SCORE |
|---|
| 1109 |
column : identity |
|---|
| 1110 |
column : expect |
|---|
| 1111 |
column : query_frame |
|---|
| 1112 |
column : GENOMIC_RANGE |
|---|
| 1113 |
column : MATCH_RANGE |
|---|
| 1114 |
column : GENOMIC_LENGTH |
|---|
| 1115 |
column : MATCH_LENGTH |
|---|
| 1116 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1117 |
groupby : HOMOLOGY |
|---|
| 1118 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1119 |
|
|---|
| 1120 |
[Type] |
|---|
| 1121 |
label : Other Invertebrates |
|---|
| 1122 |
tiername : BLASTX Similarity to Other Species |
|---|
| 1123 |
datatype : blastx_masked:aa_SPTR.othinv |
|---|
| 1124 |
datatype : blastx:aa_SPTR.othinv |
|---|
| 1125 |
glyph : DrawableResultFeatureSet |
|---|
| 1126 |
color : 255,153,0 |
|---|
| 1127 |
usescore : true |
|---|
| 1128 |
column : SCORE |
|---|
| 1129 |
column : identity |
|---|
| 1130 |
column : expect |
|---|
| 1131 |
column : query_frame |
|---|
| 1132 |
column : GENOMIC_RANGE |
|---|
| 1133 |
column : MATCH_RANGE |
|---|
| 1134 |
column : GENOMIC_LENGTH |
|---|
| 1135 |
column : MATCH_LENGTH |
|---|
| 1136 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1137 |
groupby : HOMOLOGY |
|---|
| 1138 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1139 |
|
|---|
| 1140 |
[Tier] |
|---|
| 1141 |
tiername : Insertion Site |
|---|
| 1142 |
|
|---|
| 1143 |
[Type] |
|---|
| 1144 |
label : P Element Insertion |
|---|
| 1145 |
tiername : Insertion Site |
|---|
| 1146 |
datatype : sim4:na_pe.dros |
|---|
| 1147 |
datatype : pinsertion:dummy |
|---|
| 1148 |
datatype : pinsertion |
|---|
| 1149 |
glyph : Triangle |
|---|
| 1150 |
# color : 64,224,208 |
|---|
| 1151 |
# Now hot pink to match annotated P elements |
|---|
| 1152 |
color : 255,0,203 |
|---|
| 1153 |
annot_type : P insertion_site |
|---|
| 1154 |
column : SCORE |
|---|
| 1155 |
column : identity |
|---|
| 1156 |
column : GENOMIC_RANGE |
|---|
| 1157 |
column : GENOMIC_LENGTH |
|---|
| 1158 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1159 |
|
|---|
| 1160 |
[Tier] |
|---|
| 1161 |
tiername : Affymetrix Oligo |
|---|
| 1162 |
expanded : true |
|---|
| 1163 |
|
|---|
| 1164 |
[Type] |
|---|
| 1165 |
label : Oligo |
|---|
| 1166 |
tiername : Affymetrix Oligo |
|---|
| 1167 |
datatype : sim4:na_affy_oligo.dros |
|---|
| 1168 |
datatype : dmel_r3_to_dmel_r4_migration:dmel_r3_affy_oligos |
|---|
| 1169 |
glyph : DrawableResultFeatureSet |
|---|
| 1170 |
color : 204,102,0 |
|---|
| 1171 |
usescore : true |
|---|
| 1172 |
column : score |
|---|
| 1173 |
column : GENOMIC_RANGE |
|---|
| 1174 |
column : query_frame |
|---|
| 1175 |
column : probability |
|---|
| 1176 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1177 |
|
|---|
| 1178 |
[Type] |
|---|
| 1179 |
label : New Oligo |
|---|
| 1180 |
tiername : Affymetrix Oligo |
|---|
| 1181 |
datatype : sim4:na_newAffy_oligo.dmel |
|---|
| 1182 |
glyph : DrawableResultFeatureSet |
|---|
| 1183 |
color : 204,102,0 |
|---|
| 1184 |
usescore : true |
|---|
| 1185 |
column : score |
|---|
| 1186 |
column : GENOMIC_RANGE |
|---|
| 1187 |
column : query_frame |
|---|
| 1188 |
column : probability |
|---|
| 1189 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1190 |
|
|---|
| 1191 |
[Tier] |
|---|
| 1192 |
tiername : Cytology |
|---|
| 1193 |
visible : false |
|---|
| 1194 |
expanded : true |
|---|
| 1195 |
|
|---|
| 1196 |
[Tier] |
|---|
| 1197 |
tiername : BAC Scaffold |
|---|
| 1198 |
visible : false |
|---|
| 1199 |
expanded : true |
|---|
| 1200 |
|
|---|
| 1201 |
[Type] |
|---|
| 1202 |
label : BAC Scaffold |
|---|
| 1203 |
tiername : BAC Scaffold |
|---|
| 1204 |
datatype : clonelocator:scaffoldBACs |
|---|
| 1205 |
datatype : bdgp_unknown_clonelocator:scaffoldBACs |
|---|
| 1206 |
glyph : DrawableResultFeatureSet |
|---|
| 1207 |
color : 153,153,153 |
|---|
| 1208 |
column : GENOMIC_RANGE |
|---|
| 1209 |
column : GENOMIC_LENGTH |
|---|
| 1210 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1211 |
groupby : HOMOLOGY |
|---|
| 1212 |
|
|---|
| 1213 |
[Tier] |
|---|
| 1214 |
tiername : Tiling Path |
|---|
| 1215 |
visible : false |
|---|
| 1216 |
expanded : true |
|---|
| 1217 |
|
|---|
| 1218 |
[Type] |
|---|
| 1219 |
label : Tiling Path |
|---|
| 1220 |
tiername : Tiling Path |
|---|
| 1221 |
datatype : assembly:path |
|---|
| 1222 |
glyph : DrawableResultFeatureSet |
|---|
| 1223 |
color : 204,204,204 |
|---|
| 1224 |
column : GENOMIC_RANGE |
|---|
| 1225 |
column : GENOMIC_LENGTH |
|---|
| 1226 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1227 |
groupby : HOMOLOGY |
|---|
| 1228 |
|
|---|
| 1229 |
[Tier] |
|---|
| 1230 |
tiername : Start Codon |
|---|
| 1231 |
|
|---|
| 1232 |
[Type] |
|---|
| 1233 |
label : startcodon_frame1 |
|---|
| 1234 |
tiername : Start Codon |
|---|
| 1235 |
datatype : codons |
|---|
| 1236 |
datatype : startcodon_frame1 |
|---|
| 1237 |
glyph : SiteCodon |
|---|
| 1238 |
color : 34,220,34 |
|---|
| 1239 |
column : NAME |
|---|
| 1240 |
column : GENOMIC_RANGE |
|---|
| 1241 |
sortbycolumn : NAME |
|---|
| 1242 |
|
|---|
| 1243 |
[Type] |
|---|
| 1244 |
label : startcodon_frame2 |
|---|
| 1245 |
tiername : Start Codon |
|---|
| 1246 |
datatype : codons |
|---|
| 1247 |
datatype : startcodon_frame2 |
|---|
| 1248 |
glyph : SiteCodon |
|---|
| 1249 |
color : 34,220,34 |
|---|
| 1250 |
column : NAME |
|---|
| 1251 |
column : GENOMIC_RANGE |
|---|
| 1252 |
sortbycolumn : NAME |
|---|
| 1253 |
|
|---|
| 1254 |
[Type] |
|---|
| 1255 |
label : startcodon_frame3 |
|---|
| 1256 |
tiername : Start Codon |
|---|
| 1257 |
datatype : codons |
|---|
| 1258 |
datatype : startcodon_frame3 |
|---|
| 1259 |
glyph : SiteCodon |
|---|
| 1260 |
color : 34,220,34 |
|---|
| 1261 |
column : NAME |
|---|
| 1262 |
column : GENOMIC_RANGE |
|---|
| 1263 |
sortbycolumn : NAME |
|---|
| 1264 |
|
|---|
| 1265 |
[Tier] |
|---|
| 1266 |
tiername : Stop Codon |
|---|
| 1267 |
|
|---|
| 1268 |
[Type] |
|---|
| 1269 |
label : stopcodon_frame1 |
|---|
| 1270 |
tiername : Stop Codon |
|---|
| 1271 |
datatype : codons |
|---|
| 1272 |
datatype : stopcodon_frame1 |
|---|
| 1273 |
glyph : SiteCodon |
|---|
| 1274 |
color : red |
|---|
| 1275 |
column : NAME |
|---|
| 1276 |
column : GENOMIC_RANGE |
|---|
| 1277 |
sortbycolumn : NAME |
|---|
| 1278 |
|
|---|
| 1279 |
[Type] |
|---|
| 1280 |
label : stopcodon_frame2 |
|---|
| 1281 |
tiername : Stop Codon |
|---|
| 1282 |
datatype : codons |
|---|
| 1283 |
datatype : stopcodon_frame2 |
|---|
| 1284 |
glyph : SiteCodon |
|---|
| 1285 |
color : red |
|---|
| 1286 |
column : NAME |
|---|
| 1287 |
column : GENOMIC_RANGE |
|---|
| 1288 |
sortbycolumn : NAME |
|---|
| 1289 |
|
|---|
| 1290 |
[Type] |
|---|
| 1291 |
label : stopcodon_frame3 |
|---|
| 1292 |
tiername : Stop Codon |
|---|
| 1293 |
datatype : codons |
|---|
| 1294 |
datatype : stopcodon_frame3 |
|---|
| 1295 |
glyph : SiteCodon |
|---|
| 1296 |
color : red |
|---|
| 1297 |
column : NAME |
|---|
| 1298 |
column : GENOMIC_RANGE |
|---|
| 1299 |
sortbycolumn : NAME |
|---|
| 1300 |
|
|---|
| 1301 |
[Tier] |
|---|
| 1302 |
tiername : Repeat |
|---|
| 1303 |
visible : true |
|---|
| 1304 |
expanded : false |
|---|
| 1305 |
|
|---|
| 1306 |
[Type] |
|---|
| 1307 |
label : Repeatmasker |
|---|
| 1308 |
tiername : Repeat |
|---|
| 1309 |
datatype : repeatmasker:dummy |
|---|
| 1310 |
datatype : repeatmasker_dummy |
|---|
| 1311 |
datatype : RepeatMasker:dummy |
|---|
| 1312 |
datatype : repeatmasker |
|---|
| 1313 |
glyph : DrawableResultFeatureSet |
|---|
| 1314 |
color : red |
|---|
| 1315 |
column : NAME |
|---|
| 1316 |
column : SCORE |
|---|
| 1317 |
column : GENOMIC_RANGE |
|---|
| 1318 |
column : MATCH_RANGE |
|---|
| 1319 |
column : GENOMIC_LENGTH |
|---|
| 1320 |
column : MATCH_LENGTH |
|---|
| 1321 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1322 |
|
|---|
| 1323 |
[Type] |
|---|
| 1324 |
label : Blastx:Repeatmask |
|---|
| 1325 |
tiername : Repeat |
|---|
| 1326 |
datatype : blastx:repeatmask |
|---|
| 1327 |
glyph : DrawableResultFeatureSet |
|---|
| 1328 |
color : red |
|---|
| 1329 |
column : NAME |
|---|
| 1330 |
column : SCORE |
|---|
| 1331 |
column : GENOMIC_RANGE |
|---|
| 1332 |
column : MATCH_RANGE |
|---|
| 1333 |
column : GENOMIC_LENGTH |
|---|
| 1334 |
column : MATCH_LENGTH |
|---|
| 1335 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1336 |
|
|---|
| 1337 |
[Type] |
|---|
| 1338 |
label : Repeat_GFF |
|---|
| 1339 |
tiername : Repeat |
|---|
| 1340 |
datatype : repeat_gff:censor |
|---|
| 1341 |
datatype : repeat_gff:dummy |
|---|
| 1342 |
glyph : DrawableResultFeatureSet |
|---|
| 1343 |
color : red |
|---|
| 1344 |
column : NAME |
|---|
| 1345 |
column : SCORE |
|---|
| 1346 |
column : GENOMIC_RANGE |
|---|
| 1347 |
column : MATCH_RANGE |
|---|
| 1348 |
column : GENOMIC_LENGTH |
|---|
| 1349 |
column : MATCH_LENGTH |
|---|
| 1350 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1351 |
|
|---|
| 1352 |
[Type] |
|---|
| 1353 |
label : Repeatrunner |
|---|
| 1354 |
tiername : Repeat |
|---|
| 1355 |
datatype : repeat_runner_seg:dummy |
|---|
| 1356 |
datatype : repeat_runner_seg |
|---|
| 1357 |
glyph : DrawableResultFeatureSet |
|---|
| 1358 |
color : 255,152,255 |
|---|
| 1359 |
usescore : false |
|---|
| 1360 |
column : NAME |
|---|
| 1361 |
column : SCORE |
|---|
| 1362 |
column : GENOMIC_RANGE |
|---|
| 1363 |
column : GENOMIC_LENGTH |
|---|
| 1364 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1365 |
|
|---|
| 1366 |
[Tier] |
|---|
| 1367 |
tiername : Promoter prediction |
|---|
| 1368 |
visible : false |
|---|
| 1369 |
expanded : true |
|---|
| 1370 |
|
|---|
| 1371 |
[Type] |
|---|
| 1372 |
label : Promoter prediction |
|---|
| 1373 |
tiername : Promoter prediction |
|---|
| 1374 |
datatype : promoter:dummy |
|---|
| 1375 |
datatype : sim4:promoter_all_1941.fa |
|---|
| 1376 |
datatype : McProm5_20_03:promoter |
|---|
| 1377 |
datatype : McPromoter3.0 |
|---|
| 1378 |
glyph : PromoterGlyph |
|---|
| 1379 |
color : 255,255,51 |
|---|
| 1380 |
#annot_type : promoter |
|---|
| 1381 |
usescore : true |
|---|
| 1382 |
maxscore : 1.0 |
|---|
| 1383 |
column : NAME |
|---|
| 1384 |
column : SCORE |
|---|
| 1385 |
column : GENOMIC_RANGE |
|---|
| 1386 |
column : GENOMIC_LENGTH |
|---|
| 1387 |
sortbycolumn : SCORE |
|---|
| 1388 |
|
|---|
| 1389 |
[Type] |
|---|
| 1390 |
label : Cytology |
|---|
| 1391 |
tiername : Cytology |
|---|
| 1392 |
datatype : locator:cytology |
|---|
| 1393 |
datatype : aubrey_cytolocator:cytology |
|---|
| 1394 |
glyph : DrawableResultFeatureSet |
|---|
| 1395 |
color : 102,102,102 |
|---|
| 1396 |
column : GENOMIC_RANGE |
|---|
| 1397 |
column : GENOMIC_LENGTH |
|---|
| 1398 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1399 |
|
|---|
| 1400 |
[Tier] |
|---|
| 1401 |
tiername : Sequence selection |
|---|
| 1402 |
|
|---|
| 1403 |
[Type] |
|---|
| 1404 |
label : Sequence selection |
|---|
| 1405 |
tiername : Sequence selection |
|---|
| 1406 |
datatype : Sequence selection |
|---|
| 1407 |
glyph : DrawableResultFeatureSet |
|---|
| 1408 |
color : orange |
|---|
| 1409 |
column : NAME |
|---|
| 1410 |
sortbycolumn : NAME |
|---|
| 1411 |
|
|---|
| 1412 |
[Tier] |
|---|
| 1413 |
tiername : Do Not Show |
|---|
| 1414 |
visible : false |
|---|
| 1415 |
|
|---|
| 1416 |
# The result types that follow are just in example.xml. If we change |
|---|
| 1417 |
# example.xml, we may be able to delete these. |
|---|
| 1418 |
[Type] |
|---|
| 1419 |
label : DGC cDNA |
|---|
| 1420 |
tiername : Do Not Show |
|---|
| 1421 |
datatype : sim4:na_cDNA.dros |
|---|
| 1422 |
datatype : sim4_na_cDNA.dros |
|---|
| 1423 |
datatype : sim4:na_DGC.dros |
|---|
| 1424 |
datatype : sim4:na_DGC.in_process.dros |
|---|
| 1425 |
glyph : DrawableResultFeatureSet |
|---|
| 1426 |
color : white |
|---|
| 1427 |
usescore : true |
|---|
| 1428 |
column : NAME |
|---|
| 1429 |
column : SCORE |
|---|
| 1430 |
column : description |
|---|
| 1431 |
column : GENOMIC_RANGE |
|---|
| 1432 |
column : MATCH_RANGE |
|---|
| 1433 |
column : GENOMIC_LENGTH |
|---|
| 1434 |
column : MATCH_LENGTH |
|---|
| 1435 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1436 |
groupby : HOMOLOGY |
|---|
| 1437 |
freshdate : Fri Jan 31 00:00:00 PST 2003 |
|---|
| 1438 |
|
|---|
| 1439 |
[Type] |
|---|
| 1440 |
label : EST group |
|---|
| 1441 |
tiername : Do Not Show |
|---|
| 1442 |
datatype : groupest:na_DGC.dros |
|---|
| 1443 |
datatype : groupest:dummy |
|---|
| 1444 |
datatype : groupest:na_est.dros |
|---|
| 1445 |
datatype : groupest:na_EST.all_nr.dros |
|---|
| 1446 |
datatype : groupest:na_EST.complete.dros |
|---|
| 1447 |
datatype : groupest:na_DGC_EST_nr.dros |
|---|
| 1448 |
datatype : groupest:na_DGC.in_process.dros |
|---|
| 1449 |
datatype : groupest:ncRNA_RT-PCR_seqs.fasta |
|---|
| 1450 |
glyph : DrawableResultFeatureSet |
|---|
| 1451 |
color : white |
|---|
| 1452 |
usescore : true |
|---|
| 1453 |
column : NAME |
|---|
| 1454 |
column : SCORE |
|---|
| 1455 |
column : READS |
|---|
| 1456 |
column : GENOMIC_RANGE |
|---|
| 1457 |
column : MATCH_RANGE |
|---|
| 1458 |
column : GENOMIC_LENGTH |
|---|
| 1459 |
column : MATCH_LENGTH |
|---|
| 1460 |
sortbycolumn : MATCH_RANGE |
|---|
| 1461 |
|
|---|
| 1462 |
# nothing like this in chado |
|---|
| 1463 |
[Type] |
|---|
| 1464 |
label : Fly EST All |
|---|
| 1465 |
tiername : Do Not Show |
|---|
| 1466 |
datatype : sim4:na_EST.complete.dros |
|---|
| 1467 |
datatype : sim4:na_EST.all_nr.dros |
|---|
| 1468 |
glyph : DrawableResultFeatureSet |
|---|
| 1469 |
color : 153,255,153 |
|---|
| 1470 |
usescore : true |
|---|
| 1471 |
column : NAME |
|---|
| 1472 |
column : SCORE |
|---|
| 1473 |
column : GENOMIC_RANGE |
|---|
| 1474 |
column : MATCH_RANGE |
|---|
| 1475 |
column : GENOMIC_LENGTH |
|---|
| 1476 |
column : MATCH_LENGTH |
|---|
| 1477 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1478 |
groupby : HOMOLOGY |
|---|
| 1479 |
|
|---|
| 1480 |
# currently nothing like this in chado |
|---|
| 1481 |
[Type] |
|---|
| 1482 |
label : Community Error Report |
|---|
| 1483 |
tiername : Do Not Show |
|---|
| 1484 |
datatype : sim4:na_users_i.dros |
|---|
| 1485 |
glyph : DrawableResultFeatureSet |
|---|
| 1486 |
color : 0,240,0 |
|---|
| 1487 |
usescore : true |
|---|
| 1488 |
column : SCORE |
|---|
| 1489 |
column : GENOMIC_RANGE |
|---|
| 1490 |
column : MATCH_RANGE |
|---|
| 1491 |
column : GENOMIC_LENGTH |
|---|
| 1492 |
column : MATCH_LENGTH |
|---|
| 1493 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1494 |
groupby : HOMOLOGY |
|---|
| 1495 |
|
|---|
| 1496 |
// These two are in gadfly3 (but not gadflyx) |
|---|
| 1497 |
[Type] |
|---|
| 1498 |
label : small RNA result |
|---|
| 1499 |
tiername : Do Not Show |
|---|
| 1500 |
datatype : sim4:na_snRNA.dros |
|---|
| 1501 |
datatype : sim4:na_tRNA.dros |
|---|
| 1502 |
datatype : snRNA |
|---|
| 1503 |
glyph : DrawableResultFeatureSet |
|---|
| 1504 |
color : 50,255,10 |
|---|
| 1505 |
usescore : true |
|---|
| 1506 |
column : SCORE |
|---|
| 1507 |
column : GENOMIC_RANGE |
|---|
| 1508 |
column : MATCH_RANGE |
|---|
| 1509 |
column : GENOMIC_LENGTH |
|---|
| 1510 |
column : MATCH_LENGTH |
|---|
| 1511 |
column : query_frame |
|---|
| 1512 |
sortbycolumn : SCORE |
|---|
| 1513 |
groupby : HOMOLOGY |
|---|
| 1514 |
|
|---|
| 1515 |
|
|---|
| 1516 |
// for synteny |
|---|
| 1517 |
[Tier] |
|---|
| 1518 |
tiername : Synteny |
|---|
| 1519 |
|
|---|
| 1520 |
[Type] |
|---|
| 1521 |
typename : Putative Ortholog |
|---|
| 1522 |
tiername : Synteny |
|---|
| 1523 |
resulttype : syntenicblock:dummy |
|---|
| 1524 |
glyph : DrawableResultFeatureSet |
|---|
| 1525 |
color : 255,102,153 |
|---|
| 1526 |
usescore : false |
|---|
| 1527 |
scorethreshold : -1.0 |
|---|
| 1528 |
column : GENOMIC_LENGTH |
|---|
| 1529 |
column : MATCH_LENGTH |
|---|
| 1530 |
column : GENOMIC_RANGE |
|---|
| 1531 |
column : MATCH_RANGE |
|---|
| 1532 |
column : SCORE |
|---|
| 1533 |
groupby : GENE |
|---|
| 1534 |
synteny_link_type : SELF |
|---|
| 1535 |
link_query_species : Drosophila melanogaster |
|---|
| 1536 |
link_hit_species : Drosophila pseudoobscura |
|---|
| 1537 |
|
|---|
| 1538 |
[Tier] |
|---|
| 1539 |
tiername : Comparative Dmel |
|---|
| 1540 |
visible : true |
|---|
| 1541 |
expanded : true |
|---|
| 1542 |
|
|---|
| 1543 |
[Type] |
|---|
| 1544 |
typename : BLASTX to Dmel |
|---|
| 1545 |
tiername : Comparative Dmel |
|---|
| 1546 |
resulttype : blastx:dmel_translation.FASTA |
|---|
| 1547 |
resulttype : blastx:aa_dmel_RELEASE3-1.FASTA |
|---|
| 1548 |
resulttype : blastx_masked:aa_dmel_RELEASE3-1.FASTA |
|---|
| 1549 |
glyph : DrawableResultFeatureSet |
|---|
| 1550 |
color : 255,130,120 |
|---|
| 1551 |
minscore : 0 |
|---|
| 1552 |
maxscore : 100 |
|---|
| 1553 |
column : SCORE |
|---|
| 1554 |
column : expect |
|---|
| 1555 |
column : query_frame |
|---|
| 1556 |
column : GENOMIC_RANGE |
|---|
| 1557 |
column : MATCH_RANGE |
|---|
| 1558 |
column : GENOMIC_LENGTH |
|---|
| 1559 |
column : MATCH_LENGTH |
|---|
| 1560 |
synteny_link_type : PEPTIDE |
|---|
| 1561 |
link_query_species : Drosophila pseudoobscura |
|---|
| 1562 |
link_hit_species : Drosophila melanogaster |
|---|
| 1563 |
|
|---|
| 1564 |
[Tier] |
|---|
| 1565 |
tiername : Comparative Dpse |
|---|
| 1566 |
visible : true |
|---|
| 1567 |
expanded : true |
|---|
| 1568 |
|
|---|
| 1569 |
[Type] |
|---|
| 1570 |
typename : BLASTX to Dpse |
|---|
| 1571 |
tiername : Comparative Dpse |
|---|
| 1572 |
resulttype : blastx_masked:aa_vivekprom.dpse |
|---|
| 1573 |
glyph : DrawableResultFeatureSet |
|---|
| 1574 |
color : 255,204,51 |
|---|
| 1575 |
minscore : 0 |
|---|
| 1576 |
maxscore : 100 |
|---|
| 1577 |
column : SCORE |
|---|
| 1578 |
column : expect |
|---|
| 1579 |
column : query_frame |
|---|
| 1580 |
column : GENOMIC_RANGE |
|---|
| 1581 |
column : MATCH_RANGE |
|---|
| 1582 |
column : GENOMIC_LENGTH |
|---|
| 1583 |
column : MATCH_LENGTH |
|---|
| 1584 |
synteny_link_type : PEPTIDE |
|---|
| 1585 |
link_query_species : Drosophila melanogaster |
|---|
| 1586 |
link_hit_species : Drosophila pseudoobscura |
|---|
| 1587 |
|
|---|
| 1588 |
[Tier] |
|---|
| 1589 |
tiername : Exonerate::EST2Genome |
|---|
| 1590 |
expanded : true |
|---|
| 1591 |
|
|---|
| 1592 |
[Type] |
|---|
| 1593 |
label : Exonerate::EST2Genome |
|---|
| 1594 |
tiername : Exonerate::EST2Genome |
|---|
| 1595 |
datatype : exonerate::est2genome |
|---|
| 1596 |
datatype : est2genome |
|---|
| 1597 |
glyph : DrawableResultFeatureSet |
|---|
| 1598 |
color : 250,250,210 |
|---|
| 1599 |
column : GENOMIC_LENGTH |
|---|
| 1600 |
column : MATCH_LENGTH |
|---|
| 1601 |
column : GENOMIC_RANGE |
|---|
| 1602 |
column : MATCH_RANGE |
|---|
| 1603 |
column : SCORE |
|---|
| 1604 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1605 |
groupby : HOMOLOGY |
|---|
| 1606 |
|
|---|
| 1607 |
[Type] |
|---|
| 1608 |
label : P_oligandrum |
|---|
| 1609 |
tiername : Exonerate::EST2Genome |
|---|
| 1610 |
datatype : est2genome:P_oligandrum |
|---|
| 1611 |
datatype : est2genome:P_oligandrum; |
|---|
| 1612 |
glyph : DrawableResultFeatureSet |
|---|
| 1613 |
color : 250,250,210 |
|---|
| 1614 |
column : GENOMIC_LENGTH |
|---|
| 1615 |
column : MATCH_LENGTH |
|---|
| 1616 |
column : GENOMIC_RANGE |
|---|
| 1617 |
column : MATCH_RANGE |
|---|
| 1618 |
column : SCORE |
|---|
| 1619 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1620 |
groupby : HOMOLOGY |
|---|
| 1621 |
|
|---|
| 1622 |
[Type] |
|---|
| 1623 |
label : P_ultimum_Sanger |
|---|
| 1624 |
tiername : Exonerate::EST2Genome |
|---|
| 1625 |
datatype : est2genome:P_ultimum_Sanger |
|---|
| 1626 |
datatype : est2genome:P_ultimum_Sanger; |
|---|
| 1627 |
glyph : DrawableResultFeatureSet |
|---|
| 1628 |
color : 240,240,202 |
|---|
| 1629 |
column : GENOMIC_LENGTH |
|---|
| 1630 |
column : MATCH_LENGTH |
|---|
| 1631 |
column : GENOMIC_RANGE |
|---|
| 1632 |
column : MATCH_RANGE |
|---|
| 1633 |
column : SCORE |
|---|
| 1634 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1635 |
groupby : HOMOLOGY |
|---|
| 1636 |
|
|---|
| 1637 |
|
|---|
| 1638 |
[Type] |
|---|
| 1639 |
label : P_ultimum_454_Sanger |
|---|
| 1640 |
tiername : Exonerate::EST2Genome |
|---|
| 1641 |
datatype : est2genome:P_ultimum_454_Sanger |
|---|
| 1642 |
datatype : est2genome:P_ultimum_454_Sanger; |
|---|
| 1643 |
glyph : DrawableResultFeatureSet |
|---|
| 1644 |
color : 230,230,194 |
|---|
| 1645 |
column : GENOMIC_LENGTH |
|---|
| 1646 |
column : MATCH_LENGTH |
|---|
| 1647 |
column : GENOMIC_RANGE |
|---|
| 1648 |
column : MATCH_RANGE |
|---|
| 1649 |
column : SCORE |
|---|
| 1650 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1651 |
groupby : HOMOLOGY |
|---|
| 1652 |
|
|---|
| 1653 |
[Tier] |
|---|
| 1654 |
tiername : Exonerate::Protein2Genome |
|---|
| 1655 |
expanded : true |
|---|
| 1656 |
|
|---|
| 1657 |
[Type] |
|---|
| 1658 |
label : Exonerate::Protein2Genome |
|---|
| 1659 |
tiername : Exonerate::Protein2Genome |
|---|
| 1660 |
datatype : exonerate::protein2genome |
|---|
| 1661 |
datatype : protein2genome |
|---|
| 1662 |
glyph : DrawableResultFeatureSet |
|---|
| 1663 |
color : 255,255,0 |
|---|
| 1664 |
column : GENOMIC_LENGTH |
|---|
| 1665 |
column : MATCH_LENGTH |
|---|
| 1666 |
column : GENOMIC_RANGE |
|---|
| 1667 |
column : MATCH_RANGE |
|---|
| 1668 |
column : SCORE |
|---|
| 1669 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1670 |
groupby : HOMOLOGY |
|---|
| 1671 |
|
|---|
| 1672 |
[Type] |
|---|
| 1673 |
label : Protein2Genome::UniProt_SwissProt |
|---|
| 1674 |
tiername : Exonerate::Protein2Genome |
|---|
| 1675 |
datatype : protein2genome:UniProt_SwissProt |
|---|
| 1676 |
datatype : protein2genome:UniProt_SwissProt; |
|---|
| 1677 |
glyph : DrawableResultFeatureSet |
|---|
| 1678 |
color : 255,255,0 |
|---|
| 1679 |
column : GENOMIC_LENGTH |
|---|
| 1680 |
column : MATCH_LENGTH |
|---|
| 1681 |
column : GENOMIC_RANGE |
|---|
| 1682 |
column : MATCH_RANGE |
|---|
| 1683 |
column : SCORE |
|---|
| 1684 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1685 |
groupby : HOMOLOGY |
|---|
| 1686 |
|
|---|
| 1687 |
[Type] |
|---|
| 1688 |
label : Protein2Genome::Phytophthora |
|---|
| 1689 |
tiername : Exonerate::Protein2Genome |
|---|
| 1690 |
datatype : protein2genome:Phytophthora |
|---|
| 1691 |
datatype : protein2genome:Phytophthora; |
|---|
| 1692 |
glyph : DrawableResultFeatureSet |
|---|
| 1693 |
color : 255,255,110 |
|---|
| 1694 |
column : GENOMIC_LENGTH |
|---|
| 1695 |
column : MATCH_LENGTH |
|---|
| 1696 |
column : GENOMIC_RANGE |
|---|
| 1697 |
column : MATCH_RANGE |
|---|
| 1698 |
column : SCORE |
|---|
| 1699 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1700 |
groupby : HOMOLOGY |
|---|
| 1701 |
|
|---|
| 1702 |
[Tier] |
|---|
| 1703 |
tiername : BLASTN |
|---|
| 1704 |
expanded : true |
|---|
| 1705 |
sorted : true |
|---|
| 1706 |
labeled : false |
|---|
| 1707 |
|
|---|
| 1708 |
[Type] |
|---|
| 1709 |
label : BLASTN |
|---|
| 1710 |
tiername : BLASTN |
|---|
| 1711 |
datatype : blastn |
|---|
| 1712 |
glyph : DrawableResultFeatureSet |
|---|
| 1713 |
color : 102,204,0 |
|---|
| 1714 |
column : GENOMIC_LENGTH |
|---|
| 1715 |
column : MATCH_LENGTH |
|---|
| 1716 |
column : GENOMIC_RANGE |
|---|
| 1717 |
column : MATCH_RANGE |
|---|
| 1718 |
column : SCORE |
|---|
| 1719 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1720 |
groupby : HOMOLOGY |
|---|
| 1721 |
|
|---|
| 1722 |
[Type] |
|---|
| 1723 |
label : BLASTN::P_ultimum_454_Sanger |
|---|
| 1724 |
tiername : BLASTN |
|---|
| 1725 |
datatype : blastn:P_ultimum_454_Sanger |
|---|
| 1726 |
datatype : blastn:P_ultimum_454_Sanger; |
|---|
| 1727 |
glyph : DrawableResultFeatureSet |
|---|
| 1728 |
color : 102,204,0 |
|---|
| 1729 |
column : GENOMIC_LENGTH |
|---|
| 1730 |
column : MATCH_LENGTH |
|---|
| 1731 |
column : GENOMIC_RANGE |
|---|
| 1732 |
column : MATCH_RANGE |
|---|
| 1733 |
column : SCORE |
|---|
| 1734 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1735 |
groupby : HOMOLOGY |
|---|
| 1736 |
|
|---|
| 1737 |
[Type] |
|---|
| 1738 |
label : BLASTN::P_ultimum_Sanger |
|---|
| 1739 |
tiername : BLASTN |
|---|
| 1740 |
datatype : blastn:P_ultimum_Sanger |
|---|
| 1741 |
datatype : blastn:P_ultimum_Sanger; |
|---|
| 1742 |
glyph : DrawableResultFeatureSet |
|---|
| 1743 |
color : 102,204,102 |
|---|
| 1744 |
column : GENOMIC_LENGTH |
|---|
| 1745 |
column : MATCH_LENGTH |
|---|
| 1746 |
column : GENOMIC_RANGE |
|---|
| 1747 |
column : MATCH_RANGE |
|---|
| 1748 |
column : SCORE |
|---|
| 1749 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1750 |
groupby : HOMOLOGY |
|---|
| 1751 |
|
|---|
| 1752 |
[Type] |
|---|
| 1753 |
label : BLASTN::P_oligandrum |
|---|
| 1754 |
tiername : BLASTN |
|---|
| 1755 |
datatype : blastn:P_oligandrum |
|---|
| 1756 |
datatype : blastn:P_oligandrum; |
|---|
| 1757 |
glyph : DrawableResultFeatureSet |
|---|
| 1758 |
color : 102,153,102 |
|---|
| 1759 |
column : GENOMIC_LENGTH |
|---|
| 1760 |
column : MATCH_LENGTH |
|---|
| 1761 |
column : GENOMIC_RANGE |
|---|
| 1762 |
column : MATCH_RANGE |
|---|
| 1763 |
column : SCORE |
|---|
| 1764 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1765 |
groupby : HOMOLOGY |
|---|
| 1766 |
|
|---|
| 1767 |
[Tier] |
|---|
| 1768 |
tiername : BLASTX |
|---|
| 1769 |
expanded : true |
|---|
| 1770 |
sorted : true |
|---|
| 1771 |
labeled : false |
|---|
| 1772 |
maxrows : 22 |
|---|
| 1773 |
|
|---|
| 1774 |
[Type] |
|---|
| 1775 |
label : BLASTX |
|---|
| 1776 |
tiername : BLASTX |
|---|
| 1777 |
datatype : blastx |
|---|
| 1778 |
glyph : DrawableResultFeatureSet |
|---|
| 1779 |
color : pink |
|---|
| 1780 |
column : GENOMIC_LENGTH |
|---|
| 1781 |
column : MATCH_LENGTH |
|---|
| 1782 |
column : GENOMIC_RANGE |
|---|
| 1783 |
column : MATCH_RANGE |
|---|
| 1784 |
column : SCORE |
|---|
| 1785 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1786 |
groupby : HOMOLOGY |
|---|
| 1787 |
|
|---|
| 1788 |
[Type] |
|---|
| 1789 |
label : BLASTX::UniProt_SwissProt |
|---|
| 1790 |
tiername : BLASTX |
|---|
| 1791 |
datatype : blastx:UniProt_SwissProt |
|---|
| 1792 |
datatype : blastx:UniProt_SwissProt; |
|---|
| 1793 |
glyph : DrawableResultFeatureSet |
|---|
| 1794 |
color : pink |
|---|
| 1795 |
column : GENOMIC_LENGTH |
|---|
| 1796 |
column : MATCH_LENGTH |
|---|
| 1797 |
column : GENOMIC_RANGE |
|---|
| 1798 |
column : MATCH_RANGE |
|---|
| 1799 |
column : SCORE |
|---|
| 1800 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1801 |
groupby : HOMOLOGY |
|---|
| 1802 |
|
|---|
| 1803 |
[Type] |
|---|
| 1804 |
label : BLASTX::Phytophthora |
|---|
| 1805 |
tiername : BLASTX |
|---|
| 1806 |
datatype : blastx:Phytophthora |
|---|
| 1807 |
datatype : blastx:Phytophthora; |
|---|
| 1808 |
glyph : DrawableResultFeatureSet |
|---|
| 1809 |
color : 255,51,204 |
|---|
| 1810 |
column : GENOMIC_LENGTH |
|---|
| 1811 |
column : MATCH_LENGTH |
|---|
| 1812 |
column : GENOMIC_RANGE |
|---|
| 1813 |
column : MATCH_RANGE |
|---|
| 1814 |
column : SCORE |
|---|
| 1815 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1816 |
groupby : HOMOLOGY |
|---|
| 1817 |
|
|---|
| 1818 |
[Tier] |
|---|
| 1819 |
tiername : TBLASTX |
|---|
| 1820 |
expanded : true |
|---|
| 1821 |
|
|---|
| 1822 |
[Type] |
|---|
| 1823 |
label : TBLASTX |
|---|
| 1824 |
tiername : TBLASTX |
|---|
| 1825 |
datatype : tblastx |
|---|
| 1826 |
glyph : DrawableResultFeatureSet |
|---|
| 1827 |
color : 102,51,102 |
|---|
| 1828 |
usescore : true |
|---|
| 1829 |
column : SCORE |
|---|
| 1830 |
column : identity |
|---|
| 1831 |
column : expect |
|---|
| 1832 |
column : query_frame |
|---|
| 1833 |
column : GENOMIC_RANGE |
|---|
| 1834 |
column : MATCH_RANGE |
|---|
| 1835 |
column : GENOMIC_LENGTH |
|---|
| 1836 |
column : MATCH_LENGTH |
|---|
| 1837 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1838 |
groupby : HOMOLOGY |
|---|
| 1839 |
|
|---|
| 1840 |
[Type] |
|---|
| 1841 |
label : TBLASTX::Other_Oomycete |
|---|
| 1842 |
tiername : TBLASTX |
|---|
| 1843 |
datatype : tblastx:Other_Oomycete |
|---|
| 1844 |
datatype : tblastx:Other_Oomycete; |
|---|
| 1845 |
glyph : DrawableResultFeatureSet |
|---|
| 1846 |
color : 103,51,102 |
|---|
| 1847 |
usescore : true |
|---|
| 1848 |
column : SCORE |
|---|
| 1849 |
column : identity |
|---|
| 1850 |
column : expect |
|---|
| 1851 |
column : query_frame |
|---|
| 1852 |
column : GENOMIC_RANGE |
|---|
| 1853 |
column : MATCH_RANGE |
|---|
| 1854 |
column : GENOMIC_LENGTH |
|---|
| 1855 |
column : MATCH_LENGTH |
|---|
| 1856 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1857 |
groupby : HOMOLOGY |
|---|
| 1858 |
|
|---|
| 1859 |
[Type] |
|---|
| 1860 |
label : TBLASTX::Phytophthora |
|---|
| 1861 |
tiername : TBLASTX |
|---|
| 1862 |
datatype : tblastx:Phytophthora |
|---|
| 1863 |
datatype : tblastx:Phytophthora; |
|---|
| 1864 |
glyph : DrawableResultFeatureSet |
|---|
| 1865 |
color : 102,51,153 |
|---|
| 1866 |
usescore : true |
|---|
| 1867 |
column : SCORE |
|---|
| 1868 |
column : identity |
|---|
| 1869 |
column : expect |
|---|
| 1870 |
column : query_frame |
|---|
| 1871 |
column : GENOMIC_RANGE |
|---|
| 1872 |
column : MATCH_RANGE |
|---|
| 1873 |
column : GENOMIC_LENGTH |
|---|
| 1874 |
column : MATCH_LENGTH |
|---|
| 1875 |
sortbycolumn : GENOMIC_RANGE |
|---|
| 1876 |
groupby : HOMOLOGY |
|---|
